Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0106
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    66   2e-11
At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containi...    29   3.8  
At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /...    28   6.7  
At3g24760.1 68416.m03108 F-box family protein   ; similar to SKP...    27   8.8  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
 Frame = +1

Query: 286 QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRC--VGH 456
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA+         ++   + H
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTH 123

Query: 457 HESTGDARRSGENFTSSVHAGILARLS-DSDQEDMKRQKYEMISVVVCNLYPFRPDGYLR 633
                D R   +    ++H GILAR   +   E +         VVV NLYPF       
Sbjct: 124 FPEMLDGR--VKTLHPNIHGGILARRDVEHHMEALNEHGIGTFDVVVVNLYPFYEKVTAP 181

Query: 634 PDVTVADAVENIDIGG 681
             ++  D +ENIDIGG
Sbjct: 182 GGISFEDGIENIDIGG 197



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +2

Query: 416 LRNAGLTVQDVSDITRAPEMLGGRVKTLHP 505
           L NAG++V  V  +T  PEML GRVKTLHP
Sbjct: 108 LENAGVSVTKVEKLTHFPEMLDGRVKTLHP 137


>At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 883

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +3

Query: 78  SAKKKKQFFVQLLMLKTL*DIFNFIVYILKKYIKTQXPLDEVKNISDYNNRLSPPVNPSQ 257
           + +K ++FF  L+  K + D+F + + ++  Y +   P        D   R    V P  
Sbjct: 615 NVRKAREFFEILVTKKIVPDLFTYTI-MINTYCRLNEPKQAYALFEDMKRR---DVKPDV 670

Query: 258 VSYTVVL 278
           V+Y+V+L
Sbjct: 671 VTYSVLL 677


>At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 469

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 309 TSSSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGRFGTPASQF 440
           TS    F Q G+T+++ +    WP +     Y  GR GT   +F
Sbjct: 97  TSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRF 140


>At3g24760.1 68416.m03108 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 383

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -2

Query: 383 CRP-HSDRLFANESRPVLSETLRRASFPFDAMFCLLKHYCVTDLTWVD 243
           C P  +D     + + + S   +R  + FD   C +  +C+   TW D
Sbjct: 187 CSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSYTWSD 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,135
Number of Sequences: 28952
Number of extensions: 267207
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)