Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0104
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    26   0.37 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.85 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.9  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 354 VPSGIAPTGITFPTSRVAFFPQ*TNWPV*SLREHEELLP 238
           VP G   TG+  P   V F P      V S+  H E LP
Sbjct: 13  VPVGRVETGVLKPGMVVVFAPANITTEVKSVEMHHEALP 51


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = -3

Query: 669 LPPPVEDASTGFMAXPRTYGPAVTFDLVLVVCPSSFQNRFVNTSTSSNNTDHASLLDGRT 490
           LPP +  A+   +  P+T   A   +   V   +   +R + TS S  N    S L   +
Sbjct: 125 LPPTLPAAAAAALLPPQTAAMAAYLNAAAVAAAAQQSHRLMMTSPSGFNRASVSPLISSS 184

Query: 489 FLAPDGSF 466
             +P G F
Sbjct: 185 -SSPPGVF 191


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 681  KVEWLPPPVEDASTGFMAXPRTYGPAVTF 595
            +V W+ PP+  A+         YGP+ T+
Sbjct: 1118 RVSWVSPPLTAANGVIKGYKVIYGPSDTW 1146


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +1

Query: 412  WKLRHCDWTQS 444
            W   HCDW ++
Sbjct: 2271 WNKDHCDWPEN 2281


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 492 TFLAPDGSFTLVR 454
           T   PDG FT++R
Sbjct: 579 TVTVPDGGFTIIR 591


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,654
Number of Sequences: 336
Number of extensions: 4158
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)