Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0104
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 137 2e-33
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 137 2e-33
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 137 2e-33
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 48 2e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.53
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 27 2.8
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 26 4.9
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 8.6
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 25 8.6
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 137 bits (331), Expect = 2e-33
Identities = 70/136 (51%), Positives = 85/136 (62%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK DRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
D +TRVKLPSGAKKV+PSS ++ + K R P RG
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
Query: 626 XAMNPVEASSTGGGNH 673
AMNPV+ GGGNH
Sbjct: 201 VAMNPVD-HPHGGGNH 215
Score = 101 bits (241), Expect = 1e-22
Identities = 46/77 (59%), Positives = 61/77 (79%)
Frame = +1
Query: 43 AQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDP 222
AQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+P
Sbjct: 7 AQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNP 65
Query: 223 YKFXTRKELFMLPKALH 273
Y + T E F+ + ++
Sbjct: 66 YHYRTDVETFVATEGMY 82
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 137 bits (331), Expect = 2e-33
Identities = 70/136 (51%), Positives = 85/136 (62%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK DRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
D +TRVKLPSGAKKV+PSS ++ + K R P RG
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
Query: 626 XAMNPVEASSTGGGNH 673
AMNPV+ GGGNH
Sbjct: 201 VAMNPVD-HPHGGGNH 215
Score = 101 bits (241), Expect = 1e-22
Identities = 46/77 (59%), Positives = 61/77 (79%)
Frame = +1
Query: 43 AQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDP 222
AQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+P
Sbjct: 7 AQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNP 65
Query: 223 YKFXTRKELFMLPKALH 273
Y + T E F+ + ++
Sbjct: 66 YHYRTDVETFVATEGMY 82
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 137 bits (331), Expect = 2e-33
Identities = 70/136 (51%), Positives = 85/136 (62%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK DRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
D +TRVKLPSGAKKV+PSS ++ + K R P RG
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
Query: 626 XAMNPVEASSTGGGNH 673
AMNPV+ GGGNH
Sbjct: 201 VAMNPVD-HPHGGGNH 215
Score = 101 bits (241), Expect = 1e-22
Identities = 46/77 (59%), Positives = 61/77 (79%)
Frame = +1
Query: 43 AQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDP 222
AQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+P
Sbjct: 7 AQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNP 65
Query: 223 YKFXTRKELFMLPKALH 273
Y + T E F+ + ++
Sbjct: 66 YHYRTDVETFVATEGMY 82
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 47.6 bits (108), Expect = 2e-06
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Frame = +2
Query: 308 LEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGA- 484
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 485 KKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSN-VTAGPYVRGXAMNPVEASSTG 661
+K+L +S + V++N++ + + RS + P VRG AMNP + G
Sbjct: 220 RKILDTS-------FATIGVVSNIYWQHRQLGKAGRSRWLGIRPTVRGTAMNPCDHPHGG 272
Query: 662 GGNHS 676
GG S
Sbjct: 273 GGGKS 277
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 29.5 bits (63), Expect = 0.53
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 555 RFVNTSTSSNNT-DHASLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 415
RF+N +T+S++T LLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 569 PAFKIGLSIRPPPATIPTMPRCLMAEPSWLQTVALLLYA 453
P K+GL+ PP + M W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 567 SFQNRFVNTSTSSNNTDHASLLDGRTFLAPDGSFTLV 457
SF+ + NT+T N + LDGR +P G V
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKV 73
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 549 VNTSTSSNNTDHASLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEA 406
+N S + D +S + + L DG+F LV G+C T+ +A
Sbjct: 96 INLIDSPGHVDFSSEVSSASRLC-DGAFVLVDAVEGVCSQTITVLRQA 142
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 638 GSWXHHVHMAQQLRLTLYLWYALPAFKIGLS 546
G H+H+ ++ LTL W+ + +G+S
Sbjct: 162 GGTFDHLHVGHKVLLTLTAWFGVKEVIVGVS 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,772
Number of Sequences: 5004
Number of extensions: 68639
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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