Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0104
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 135 4e-32
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.24
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.9
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 29 3.9
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 5.1
05_06_0211 + 26401495-26402224,26402932-26403014,26403295-264033... 28 6.8
04_04_1101 + 30903578-30903988,30904693-30905655 28 6.8
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 28 9.0
05_03_0555 + 15425486-15426856 28 9.0
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 135 bits (326), Expect = 4e-32
Identities = 68/136 (50%), Positives = 86/136 (63%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E + DRG ARASG++A VI HNP
Sbjct: 82 MYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNP 141
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
D +R+KLPSGAKK++PSS A + K R P VRG
Sbjct: 142 DNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRG 201
Query: 626 XAMNPVEASSTGGGNH 673
AMNPVE GGGNH
Sbjct: 202 VAMNPVE-HPHGGGNH 216
Score = 109 bits (262), Expect = 2e-24
Identities = 49/77 (63%), Positives = 61/77 (79%)
Frame = +1
Query: 43 AQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDP 222
AQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P
Sbjct: 7 AQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHP 66
Query: 223 YKFXTRKELFMLPKALH 273
+++ +KELF+ + ++
Sbjct: 67 FRYKHQKELFVAAEGMY 83
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 531 WRWTY*QTYFESWKGIPQVQG 593
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 409 LWKLRHCDWT 438
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 371 EEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLT 550
EEK+ + L G +IG N K T +KL G +K + VLL E +VL
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499
Query: 551 NLF 559
N F
Sbjct: 500 NYF 502
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 5.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 531 WRWTY*QTYFESWKGIPQVQG 593
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>05_06_0211 +
26401495-26402224,26402932-26403014,26403295-26403369,
26403442-26403513,26403684-26403764,26403946-26404043,
26404694-26404819,26404931-26404979,26405352-26405547,
26406475-26406491,26406786-26406839,26406845-26407036
Length = 590
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -3
Query: 663 PPVEDASTGFMAXPRTYGPAVTFDLVLVVCPSSFQNRFVNTSTSSNNTDHASLLDGRTFL 484
P E A+ F P+ + +++FDL L P+S V S+ +T+++S GR
Sbjct: 499 PRAESANGTFYKKPKKFPVSLSFDLSLAFYPAS-----VLGSSIFRDTEYSS-RTGRKLK 552
Query: 483 APDGSF 466
A +GSF
Sbjct: 553 AGNGSF 558
>04_04_1101 + 30903578-30903988,30904693-30905655
Length = 457
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 635 SWXHHVHMAQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPRCLMA 495
++ H V A + L W A G PPP TIP+ R ++A
Sbjct: 151 TFDHRVCDAYSFNMFLVAWAAAARDGHGGGTAPPPPTIPSFRRSIVA 197
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 531 SNNTDHASLLDGRTFLAPDGSFTLVR 454
+ +T H LLD R + PDG+ +R
Sbjct: 1322 TGDTPHQELLDNRDYTIPDGAIVAIR 1347
>05_03_0555 + 15425486-15426856
Length = 456
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 463 SKATVWSQEGSAIKQRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRN 603
SK TV +EG +K G G ID I + ++H ++K+N
Sbjct: 369 SKLTVKKKEGGVLKMEGASEGRKGVLAIDAEIFEVTPSFHLVEIKKN 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,674,798
Number of Sequences: 37544
Number of extensions: 516227
Number of successful extensions: 1349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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