Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0104
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 3e-37
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 137 1e-32
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 35 0.060
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 30 1.7
SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79) 29 3.0
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30) 28 6.9
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 28 9.1
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 152 bits (368), Expect = 3e-37
Identities = 76/136 (55%), Positives = 92/136 (67%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK DRGRLAR SGN+ATVI HN
Sbjct: 82 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 141
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
+ KRTRVKLPSG KKV+PSSN A ++ + K ++ P VRG
Sbjct: 142 EKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRG 201
Query: 626 XAMNPVEASSTGGGNH 673
AMNPVE GGGNH
Sbjct: 202 VAMNPVE-HPHGGGNH 216
Score = 124 bits (299), Expect = 8e-29
Identities = 56/76 (73%), Positives = 64/76 (84%)
Frame = +1
Query: 46 QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 225
QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY
Sbjct: 8 QRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPY 67
Query: 226 KFXTRKELFMLPKALH 273
++ RKELF+ + ++
Sbjct: 68 RYKLRKELFVATEGMY 83
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 137 bits (331), Expect = 1e-32
Identities = 60/83 (72%), Positives = 71/83 (85%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK DRGRLAR SGN+ATVI HN
Sbjct: 40 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 99
Query: 446 DAKRTRVKLPSGAKKVLPSSNEA 514
+ KRTRVKLPSG KKV+PSSN A
Sbjct: 100 EKKRTRVKLPSGIKKVIPSSNRA 122
Score = 66.1 bits (154), Expect = 3e-11
Identities = 28/41 (68%), Positives = 35/41 (85%)
Frame = +1
Query: 151 GVVKDIIHDPGRGAPLAVVHFRDPYKFXTRKELFMLPKALH 273
GVVK+IIHDPGRGAPLAVV FRDPY++ RKELF+ + ++
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 35.1 bits (77), Expect = 0.060
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +2
Query: 302 ATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 481
A L+ G+ P+ +P GT+V N+E +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 482 AKKVLPS 502
+K + S
Sbjct: 168 VEKEVSS 174
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -1
Query: 626 HHVHMAQQLRLTLYLWYALPAFKIGLSIRPPPAT--IPTMPRCLMAEPSWLQTVALLLYA 453
H V++AQ + TL LP+ LS P T P C + P+ +QT+ L Y
Sbjct: 550 HEVNLAQYVHQTLSKLSTLPSMYTKLSTLPSMYTKLYPNSQHCPVCTPNSIQTLNLAQYV 609
Query: 452 *HQ 444
HQ
Sbjct: 610 -HQ 611
>SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 618 TYGPAVTFDLVLVVCPSSFQNRFVNTSTSSNNT 520
TY + FD VL +S +NR +T T++NNT
Sbjct: 268 TYSKSKQFDQVLTTFENSSRNRVNDTLTNNNNT 300
>SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)
Length = 696
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 618 TYGPAVTFDLVLVVCPSSFQNRFVNTSTSSNNT 520
TY + FD VL +S +NR +T T++NNT
Sbjct: 268 TYSKSKQFDQVLTTFENSSRNRVNDTLTNNNNT 300
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 457 TLSIRIVSNHSGEVSRGTCQTTSIXHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 284
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 283 KLACV 269
CV
Sbjct: 136 NQRCV 140
>SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30)
Length = 474
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -1
Query: 368 DCTQWY---PQA*LQQASHFQLQELLSFHNKQIGLCRAFGSMKSSFLVLNL----YGSRK 210
D T+W +A +QQ+ F ++L S+ GSM+S+ ++ + +G K
Sbjct: 258 DTTKWTRNGTEASVQQSQRFHTRDLYSYE----------GSMESTLIIKGVRIQDFGCYK 307
Query: 209 CTTAKGAPLPGSWIISL 159
CT A L SW+ L
Sbjct: 308 CTVATSNGLGSSWVCLL 324
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 686 PIRLN-GYHPPWRMPLQGSWXHHVHMAQQLRLTLYLWYALPAFKIGLSIRPPPATIP 519
P+RL PP R+P+ +V + L L ++L LP ++ ++ PPP +P
Sbjct: 874 PVRLPVATPPPVRVPVATPLPLYVFLLLPLPLFVFLLLPLPPVRVPVA-TPPPVRVP 929
>SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -1
Query: 434 QSQWRSFQRHVPDDLYQXFSLQDCTQWY 351
++++RSF R VP D YQ +++ + Q++
Sbjct: 144 KTRYRSFLRTVPSDEYQAWAMAEFVQYF 171
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 597 FDLVLVVCPSSFQNRFVNTSTS-SNNTDHASL-LDGRTFLAPDGSFT 463
F L V PSS QN F + + + T + +L LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,261,357
Number of Sequences: 59808
Number of extensions: 568964
Number of successful extensions: 1359
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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