Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0104
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 144 8e-35
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 37 0.017
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 31 1.1
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 31 1.1
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 31 1.1
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 31 1.1
AF067215-1|AAC17011.1| 495|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 6.0
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 28 6.0
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 28 6.0
AF125451-6|AAD12825.1| 554|Caenorhabditis elegans Hypothetical ... 28 6.0
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 28 6.0
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 28 8.0
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 144 bits (348), Expect = 8e-35
Identities = 69/136 (50%), Positives = 91/136 (66%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
++TGQF++CG KA +++GN++PVG +PEGT +CN+E K DRG +ARASGN+ATVI HNP
Sbjct: 82 MHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNP 141
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
D K+TR++LPSGAKKV+ S N A L+ K ++ + P VRG
Sbjct: 142 DTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRG 201
Query: 626 XAMNPVEASSTGGGNH 673
AMNPVE GGGNH
Sbjct: 202 VAMNPVE-HPHGGGNH 216
Score = 120 bits (290), Expect = 8e-28
Identities = 53/76 (69%), Positives = 61/76 (80%)
Frame = +1
Query: 46 QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 225
QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPY
Sbjct: 8 QRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPY 67
Query: 226 KFXTRKELFMLPKALH 273
K+ T K + + +H
Sbjct: 68 KYKTVKTTVVAAEGMH 83
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 317 GNVMPVGAMPEGTIVCNLEE-KMXDRGRLARASGNFATVIGHNPDAKRTRVKLP 475
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 431 IGHNPDAKRTRVKLPSGAKKVLPSSNEAWSVLLLE 535
IGH D +RTR LP+G KKVL + + +LL++
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -3
Query: 399 RRPLSXIFSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SLREHEELLP 238
R PL ++ VP G TGI P V F PQ V S+ H E LP
Sbjct: 213 RLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLP 266
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -3
Query: 399 RRPLSXIFSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SLREHEELLP 238
R PL ++ VP G TGI P V F PQ V S+ H E LP
Sbjct: 247 RLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLP 300
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -3
Query: 399 RRPLSXIFSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SLREHEELLP 238
R PL ++ VP G TGI P V F PQ V S+ H E LP
Sbjct: 247 RLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLP 300
>AF067215-1|AAC17011.1| 495|Caenorhabditis elegans Hypothetical
protein ZK380.2 protein.
Length = 495
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 496 AIKQRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWAICTWXCHEPCRGILH 657
++K VG V+G G +P + + + + W+IC+W +P R +H
Sbjct: 16 SLKLPWKVGAVSGPGACLQPARLTPASLRSEETETSIWSICSWFLGDP-RSNMH 68
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 136 HGYIKGVVKDIIHDPGRGAPLAVVHFR 216
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 136 HGYIKGVVKDIIHDPGRGAPLAVVHFR 216
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 684 YKVEWLPPPVEDASTGFMAXPRTYGPAVTFDLVLVVCPSSF 562
Y V + PPP + T F +TYGP T +V V P F
Sbjct: 24 YAVRFEPPP---SKTCFDVTLKTYGPPYTEYIVTVAIPPKF 61
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 539 PPPATIPTMPRCLMAEPSWLQT 474
PPPA P CLM +P W QT
Sbjct: 126 PPPAPSSIPPHCLMPQP-WYQT 146
>AF125451-6|AAD12825.1| 554|Caenorhabditis elegans Hypothetical
protein Y37E11B.5 protein.
Length = 554
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 198 GCCTLPRSIQVQXKEGALHAPE 263
GCC L I+ KEG L APE
Sbjct: 329 GCCPLTVKIRTGMKEGVLKAPE 350
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 539 PPPATIPTMPRCLMAEPSWLQT 474
PPPA P CLM +P W QT
Sbjct: 126 PPPAPSSIPPHCLMPQP-WYQT 146
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 73 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 198
+S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 1 MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,263,508
Number of Sequences: 27780
Number of extensions: 407754
Number of successful extensions: 1027
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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