Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0104
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    27   0.24 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.75 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.75 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.75 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = -3

Query: 477 DGSFTLVRLASGLCPITVAKFPEARARR-PLSXIFSSRLHTMVPSGIAPTGITFPTSRVA 301
           DG+     L   L  I     P  +A R PL  ++       VP G   TGI  P   V 
Sbjct: 220 DGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVT 279

Query: 300 FFPQ*TNWPV*SLREHEELL 241
           F P      V S+  H E L
Sbjct: 280 FAPAALTTEVKSVEMHHEAL 299


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -3

Query: 399 RRPLSXIFSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SLREHEELL 241
           R PL  ++       VP G   TG+  P   V F P      V S+  H E L
Sbjct: 190 RLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEAL 242


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 431 IGHNPDAKRTRVKLPSGAKKVLPSSNEAWSVLLLE 535
           IG+  + K+TR  LP+G +KVL  + +   VL+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -3

Query: 399 RRPLSXIFSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SLREHEELL 241
           R PL  ++       VP G   TG+  P   V F P      V S+  H E L
Sbjct: 247 RLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEAL 299


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 382 HFLFKIAHNGTLRHSSNRHHI 320
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 382 HFLFKIAHNGTLRHSSNRHHI 320
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 382 HFLFKIAHNGTLRHSSNRHHI 320
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 382 HFLFKIAHNGTLRHSSNRHHI 320
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 681  KVEWLPPPVED 649
            KV W PPP ED
Sbjct: 994  KVTWKPPPRED 1004


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 668 YHPPWRMPLQGSWXHHVH 615
           +HP    P +GS  HH H
Sbjct: 321 HHPSQYHPHRGSSPHHQH 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,590
Number of Sequences: 438
Number of extensions: 5166
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)