Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0104
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 140 1e-33
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 137 6e-33
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 132 2e-31
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 44 1e-04
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 44 1e-04
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 29 3.2
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 29 4.3
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 5.7
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 28 5.7
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 28 5.7
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 28 7.5
At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger) fa... 28 7.5
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi... 28 7.5
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 27 9.9
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 27 9.9
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 140 bits (338), Expect = 1e-33
Identities = 69/136 (50%), Positives = 90/136 (66%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E + DRG LARASG++A VI HNP
Sbjct: 83 MYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNP 142
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
++ TRVKLPSG+KK+LPS+ A + F K ++ P VRG
Sbjct: 143 ESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRG 202
Query: 626 XAMNPVEASSTGGGNH 673
AMNPVE GGGNH
Sbjct: 203 VAMNPVE-HPHGGGNH 217
Score = 105 bits (251), Expect = 4e-23
Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Frame = +1
Query: 43 AQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 219
AQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA V FR
Sbjct: 7 AQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRH 66
Query: 220 PYKFXTRKELFMLPKALH 273
P+++ +KELF+ + ++
Sbjct: 67 PFRYMKQKELFVAAEGMY 84
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 137 bits (332), Expect = 6e-33
Identities = 70/136 (51%), Positives = 88/136 (64%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E + DRG LARASG++A VI HNP
Sbjct: 82 MYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNP 141
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
D+ TR+KLPSG+KK++PS A + K R + P VRG
Sbjct: 142 DSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRG 201
Query: 626 XAMNPVEASSTGGGNH 673
AMNPVE GGGNH
Sbjct: 202 VAMNPVE-HPHGGGNH 216
Score = 110 bits (264), Expect = 1e-24
Identities = 50/77 (64%), Positives = 61/77 (79%)
Frame = +1
Query: 43 AQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDP 222
AQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P
Sbjct: 7 AQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHP 66
Query: 223 YKFXTRKELFMLPKALH 273
++F +KELF+ + ++
Sbjct: 67 FRFKKQKELFVAAEGMY 83
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 132 bits (319), Expect = 2e-31
Identities = 67/136 (49%), Positives = 85/136 (62%)
Frame = +2
Query: 266 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 445
+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E + DRG ARASG++A VI HNP
Sbjct: 82 MYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNP 141
Query: 446 DAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 625
D +R+KLPSG+KK++PS A + K R P VRG
Sbjct: 142 DNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRG 201
Query: 626 XAMNPVEASSTGGGNH 673
AMNPVE GGGNH
Sbjct: 202 VAMNPVE-HPHGGGNH 216
Score = 110 bits (264), Expect = 1e-24
Identities = 50/77 (64%), Positives = 61/77 (79%)
Frame = +1
Query: 43 AQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDP 222
AQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P
Sbjct: 7 AQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHP 66
Query: 223 YKFXTRKELFMLPKALH 273
++F +KELF+ + ++
Sbjct: 67 FRFKKQKELFVAAEGMY 83
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/121 (30%), Positives = 55/121 (45%)
Frame = +2
Query: 314 VGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 493
+G+ MP+G M GTI+ N+E ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 494 LPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRGXAMNPVEASSTGGGNH 673
+ N + V ++ KL S + P VRG AMNP + GG
Sbjct: 118 I---NAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIR--PKVRGVAMNPCDHPHGGGEGK 172
Query: 674 S 676
S
Sbjct: 173 S 173
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/121 (30%), Positives = 55/121 (45%)
Frame = +2
Query: 314 VGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 493
+G+ MP+G M GTI+ N+E ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 494 LPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRGXAMNPVEASSTGGGNH 673
+ N + V ++ KL S + P VRG AMNP + GG
Sbjct: 118 I---NAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIR--PKVRGVAMNPCDHPHGGGEGK 172
Query: 674 S 676
S
Sbjct: 173 S 173
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 463 SKATVWSQEGSAIKQRGMVGIVAGGGRIDKPILKAGRAYH 582
SK +W +A++ RG++ + I +L+ GR H
Sbjct: 650 SKTFMWKTLSAAVRMRGLISVNVASSGIASLLLQGGRTAH 689
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 587 YLWYALPAFKIGL--SIRPPPATIPTMPRCLMAEPSWLQTVALL 462
Y+WYALP + IGL ++ T P L PS L V +
Sbjct: 301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFM 344
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 531 WRWTY*QTYFESWKGIPQVQG 593
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 326 SHFQLQELLSF--HNKQIGLCRAFGSMKSSFLVLNLYGS 216
S F Q LL F H +GL R GS+ +V N +GS
Sbjct: 617 SRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGS 655
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -3
Query: 666 PPPVEDASTGF---MAXPRTYG-PAVTFDLVLVVCPSSFQNRFVNTSTSSNN 523
PPP+ +S G + P G PA +DL ++ + +Q +++S+SSNN
Sbjct: 109 PPPLPASSNGLDPVLPSPEICGFPASDYDLKVIPGNAIYQFPAIDSSSSSNN 160
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 416 NFATVIGHNPDAKRTRVKLPSGAKKVLPSSNEAWSVLLLEVDVLTNLF*KLEGHTTSTRS 595
N ++IG ++ +++ P K P E W +L E D L+ L + GH S +S
Sbjct: 197 NKMSLIGETENSSDIKIRGPKSQSKHKP---EEWMLLDKESDALSQLNLAIVGHVDSGKS 253
Query: 596 NVT 604
++
Sbjct: 254 TLS 256
>At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING finger protein 38
[Homo sapiens] GI:21666412; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 153 SC*GYNP*PW*RCTFGCCTLPRSIQVQXKEGALHAPEGSTQANL 284
SC GY P+ CT CC LP I + L P G+T ++
Sbjct: 274 SCIGYAM-PFILCTTICCCLPCIISILGYREDLTQPRGATPESI 316
>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 318
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 520 GIVAGGGRIDKPILKAG--RAYHKYKVKRNCWAI 615
G+ GG +D K G R H +RNCWA+
Sbjct: 117 GLTPGGVTVDMTSSKPGLAREIHAEARRRNCWAV 150
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 85 KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFXTRKELFM-L 258
K +KG KL R +H + +KD+ D GR P+A+ ++K+LF+ +
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLSI 1181
Query: 259 PKA 267
PK+
Sbjct: 1182 PKS 1184
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 713 LLNSWESXNPIRLNGYHPPWR 651
+L W NP+ ++G PPWR
Sbjct: 795 ILTIWNLENPMVIHGEPPPWR 815
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,429,644
Number of Sequences: 28952
Number of extensions: 383728
Number of successful extensions: 940
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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