Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0103
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    32   0.078
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    30   0.41 
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    29   0.96 
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    28   1.7  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   2.9  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   5.1  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    26   5.1  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   5.1  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.7  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   6.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   6.7  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 26/84 (30%), Positives = 42/84 (50%)
 Frame = +2

Query: 2   AAGSNSISATTKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEV 181
           A  SNS+S++T SAS   + +  S +Y ++S+    +     S  A  T ++    T E+
Sbjct: 563 ALSSNSLSSSTSSASTSYIPSASS-SYEVASNSSDYYSQTVSSITASGTTSS----TSEI 617

Query: 182 KDVKLENGNAPGASNGTSSKSEDS 253
                 N N  G+ NGTSS + +S
Sbjct: 618 VSTPASNSNT-GSLNGTSSFNVNS 640


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
 Frame = +2

Query: 2    AAGSNSISATTKSASLKRLSATDSLAYMIS--SHKY----IKHL*RKMSTEAQNTDAAVE 163
            A+GS +  ++TKS   K      S    IS  SH+     +    R+  T A N ++  +
Sbjct: 817  ASGSRNSISSTKSPQHKLSDQPRSRNNSISNVSHRERSNSVSSKSRETRTSASN-ESDPK 875

Query: 164  QVTQEVKDVKLENGNAPGASNGTSSKSEDSAYLSRKPSRRFPNLEIPSPMEKPSRSRK 337
            + TQ     KLEN      S  +SSKS+  A  S KP +  P L+       P  +++
Sbjct: 876  KSTQRDSSKKLENSTVVSGSPSSSSKSD--AAKSIKPQKPEPALKPVEGTADPKSTKR 931


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 434 LGIDDYQKFLDDLAKNKKSGT*RN*KKLTTCGQPGITSHVTKSPA 568
           L +DDY+KF +DL K K+ G  R   + + C Q  I   +  S A
Sbjct: 340 LNVDDYRKFREDLWK-KRHGK-RKVYQCSNCSQTFINEDIQNSSA 382


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +2

Query: 32  TKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKLENGNA 211
           +KS  L   + TDS  +M+ S   +        T++ +T A+    T ++        N 
Sbjct: 508 SKSQGLPSPATTDSNTHMLPSQGSLLPPSSISETKSFSTKASTPLSTDDIATPLSSAPNP 567

Query: 212 PGA----SNGTSSKSEDSAYLSRKPSRRFPNLEIPSPMEKPS 325
           P      +  TSS SE S++ S   S   P     SP+ + S
Sbjct: 568 PSVMPTYARKTSSHSERSSHSSYHNSSHVPTAAFNSPIMRTS 609


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 161 EQVTQEVKDVKLENGNAPGASNGTSSKSEDSAYLSRKPSRRFPNLEIPSPMEKPSRS 331
           +Q+ +    VK     + G    TS+     +  S +P  R P+L  P+P   P  S
Sbjct: 204 DQIAENADFVKAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPS 260


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 27/113 (23%), Positives = 47/113 (41%)
 Frame = +2

Query: 119 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDSAYLSRKPSRRFPNLE 298
           +K   +  + DAA +  T +     +E    P       ++ ++SA  S KP+      E
Sbjct: 131 KKDEVKTADADAAKDLSTPQDSSKPIEEKPMPDLG----AEQKESAPSSTKPAPDAKEPE 186

Query: 299 IPSPMEKPSRSRKATNG*SKPKSLMXRK*QQRTRPXFFKKLKSVKLGIDDYQK 457
             SP  KP++S       SKPK+    +    +R     K+  ++L I +  K
Sbjct: 187 FSSPKPKPAKSEPVKQ--SKPKATETARPSSFSRNEDRVKMNRMRLRIAERLK 237


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 218 ASNGTSSKSEDSAYLSRK-PSRRFPNLEIPSPMEKPS 325
           +S+ +S  S+ S +L  + PS    +L+ PSP  KPS
Sbjct: 136 SSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPS 172


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +2

Query: 119 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDS--AYLSRKPSRRFPN 292
           R     AQ  DA+V Q    V D   +NG A       +++S  S  A ++R   +   +
Sbjct: 197 RSTFESAQIPDASVVQTV--VTDA--DNGAASVKDTIVTAESASSKGADVARSKVQDIID 252

Query: 293 LEIPSPMEKPSRSRKAT 343
            EIP P E P RS  +T
Sbjct: 253 NEIPKPSESPRRSVSST 269


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 340 DKWMKQAKVIDGKKITTTDTAIXLQKTQIGKTRHRRLPEVSR*SREEQKKWNLTKLK 510
           DK+      + GKK   TD    L+  +  K R   + E  R   EE  KW+   L+
Sbjct: 100 DKFSNGKLKVAGKKRGPTDVFGALKHLEAKKRRIESMDEEKRRKIEESDKWHRVLLQ 156


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 230 TSSKSEDSAY--LSRKPSRRFPNLEIPSPMEKPSR 328
           TSS S  S Y  LSR P  + PN+ +  P   PS+
Sbjct: 224 TSSVSAPSQYPGLSRSPPVQAPNIPVSDPWAIPSQ 258


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 185 DVKLENGNAPGASNGTSSKSEDSAYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG 349
           +V L +GN    S+  S        +S   S+   NL   S ++ P R  K TNG
Sbjct: 110 NVSLPSGNNFFTSSFDSENISKPGEVSLSESQLLGNLNQQSSIQLPDRMPKTTNG 164


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 530  GRK-LSTSFN--FVKFHFFCSSRDHLETSGSRRCRVLP 426
            GRK LS +F   F++ HF     + LET   +RC++ P
Sbjct: 1020 GRKHLSRAFRNRFLEIHFDDIPENELETILHKRCKIAP 1057


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 149 DAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDSAYL 262
           D+    VT+++KD+++   N     NGT S S +S  L
Sbjct: 42  DSTKSIVTKDIKDLRILPKNEIMPKNGTKSPSTNSTKL 79


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 336 LRERDGFSIGLGISKFGKRLEGFL 265
           L   D F++ + +SK GK   GFL
Sbjct: 804 LTRNDPFTLTIAVSKIGKNASGFL 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,111
Number of Sequences: 5004
Number of extensions: 52056
Number of successful extensions: 172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)