Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0103
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 30 1.7
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 30 2.3
05_07_0005 + 26997352-26998674 29 3.1
11_01_0552 + 4366169-4366353,4366482-4366676,4367363-4367576 29 5.3
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 28 7.1
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956... 28 7.1
12_01_1020 - 10407397-10407507,10407927-10407979,10408005-104081... 28 9.3
10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419... 28 9.3
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 28 9.3
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 155 AVEQVTQEVKDVKLENGNAPGASNGTS-SKSEDSAYLSRKPSRRFPNLEIPSPMEKPSRS 331
AV + E+K + +G AP A G+S + ++ + + R+PS+ P P P S
Sbjct: 128 AVGALCGEMKGKMVVSGGAPPAGQGSSLAAAQGTDNVKREPSQVAAPAPAPPPATLPPSS 187
Query: 332 RKATNG*SKP 361
KA ++P
Sbjct: 188 SKAVTFPARP 197
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +2
Query: 59 SATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSS 238
+ATD+++ +S Y ++ R T ++ A +++ + L N+P + NG S+
Sbjct: 86 TATDNISRNAAS-SYSENDNRPRETPGRDLIARLKERVNASRKRSLNRENSPSSPNGLSA 144
Query: 239 KSEDSAYLSRKPSRR 283
S S+ +PS R
Sbjct: 145 TSSSSSRTVSRPSHR 159
>05_07_0005 + 26997352-26998674
Length = 440
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 672 PAIPFXFPSXHRKRCPVRPSIFACVCQ---IDLRPAAAAGDFVT 550
P +P + H + P+RP++FA V RP AA G F T
Sbjct: 77 PLVPPLLAALHSRGAPLRPTVFAAVIDHLGAASRPDAAVGVFRT 120
>11_01_0552 + 4366169-4366353,4366482-4366676,4367363-4367576
Length = 197
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -2
Query: 635 SAAXCDPVYLLVSVKSIYGPLRLPVIL*RVM*FPVGRKLSTSFNFVKFHFFCSSRDHLET 456
+AA D +++V +I P LPVI R + F + SF+ + DHL +
Sbjct: 64 AAALRDMSVWVMNVVTINSPDTLPVIYERGL-FGIYHDWCESFSTYPRSYDLLHADHLFS 122
Query: 455 SGSRRCRVLPI 423
RC VLP+
Sbjct: 123 KLKSRCEVLPV 133
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +2
Query: 161 EQVTQEVKDVKLENGNAPGAS--NGTSSKSEDSAYLS------RKPSRRFPNLEIPSPME 316
+QV+ KD NG+ G S +S+S Y S R PS R N PSPM+
Sbjct: 236 DQVSPPPKDNAERNGSDHGDSPRGRENSRSPSDGYRSPAAANGRSPSPR--NNGSPSPMD 293
Query: 317 KPSRSRKATNG 349
SRS + NG
Sbjct: 294 NGSRSPRDGNG 304
>02_02_0379 +
9565001-9565515,9565553-9565833,9565884-9566084,
9566253-9566309,9566955-9567019,9567199-9567420
Length = 446
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 533 VGRKLSTSFNFVKFHFFCS 477
+GR+L T+ N V+FH CS
Sbjct: 15 IGRRLHTAINVVRFHAVCS 33
>12_01_1020 -
10407397-10407507,10407927-10407979,10408005-10408122,
10408405-10408407
Length = 94
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 374 PSMTLACFIHLSLCESVMAFPSDLGSPNLENALKASLKDKRYPRSYWT 231
PS+ L I + + SV+ P SP L KAS+ + Y R Y T
Sbjct: 25 PSLILRRLIDMVVQSSVLPLPLSPHSPPLRQQPKASIDECIYSRIYST 72
>10_08_0356 +
17141107-17141165,17141502-17141650,17141748-17141969,
17142051-17142187,17142319-17142570,17143915-17144063,
17144476-17144540,17144633-17144701,17145014-17145144,
17145218-17145505,17145669-17145811,17145898-17145951,
17146000-17146080,17149048-17149222,17149223-17149647,
17149929-17150144,17150279-17150309
Length = 881
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = -2
Query: 161 PQRHPYSVLQ*TFFFISV*CICVMISYMQASR*RTGV*ATHFSLLH*YYY 12
P PY + +FF+ C C+++S++ A + + + ++ +LH +YY
Sbjct: 594 PVPEPYCSI---YFFLYSPCDCILVSFLPAPAFNSWIRSVYY-ILHVFYY 639
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 122 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 229
++S EAQ + AVE + K K N N GA G
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,967,711
Number of Sequences: 37544
Number of extensions: 354565
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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