Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0103
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51914| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                31   1.4  
SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_53828| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_35036| Best HMM Match : ASC (HMM E-Value=7.8e-12)                   29   3.1  
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)               29   4.1  
SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_43457| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_8032| Best HMM Match : IBB (HMM E-Value=0.46)                       29   4.1  
SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)                   29   5.5  
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11)                    29   5.5  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   28   9.5  

>SB_51914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 430 KTRHRRLPEVSR*SREEQKKWNLTKLKEVDNLRPTGNY 543
           +TRHR++   +R   E    W+LT+L  V N++P  ++
Sbjct: 40  RTRHRKVTSTTRDGHEHDTGWSLTRLGMVKNMKPDPSF 77


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +2

Query: 170 TQEVKDVKLENGNAPGASNGTSSKSEDSAYLSRK--PSRRFPNLE---IPSPMEKPSRSR 334
           ++E + V+  N  +P   +  SSK   ++   +   PSR  P ++   +  P EKP RSR
Sbjct: 144 SKETQPVQQRNPASPAKKHHRSSKETPTSLAEKPSWPSRETPPVQPRNLAGPAEKPHRSR 203

Query: 335 KAT 343
           + T
Sbjct: 204 RET 206


>SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
 Frame = +1

Query: 343 KWMKQAKVIDGKKITTTDTAIXLQKTQIGKTRHRRLPEVSR*SRE----EQKKWNLTK-- 504
           K  +  K+ D KK T  D+ I   + ++ K++  R    S+         +KK+   +  
Sbjct: 34  KLFRDLKIYD-KKFTQIDSDIIFNRPEV-KSKSERKVNFSQFKAALSLCAEKKYGKREDV 91

Query: 505 LKEVDNLRPTGNYITRYKITGSRSGP*IDLTDTSKYTGSHXAALSMXTGKXEG 663
           +K VD +      +        ++G    LTDT KYTGSH       TGK  G
Sbjct: 92  IKLVDKICEGKGPVASKTTKVVKAGAVDRLTDTRKYTGSHKERFD-ETGKGRG 143


>SB_53828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +3

Query: 468 ISRRTKKVELDEIKRS*QLAANRELHHTLQNHR-QP-QRAVDRFDRHKQ 608
           +++R K +E  + +   +L+   + H T+QN R QP QRA  + ++H+Q
Sbjct: 351 LTKRIKSLETSKAELENRLSVLEKEHETVQNQRKQPIQRAAPKQEQHQQ 399


>SB_35036| Best HMM Match : ASC (HMM E-Value=7.8e-12)
          Length = 420

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -3

Query: 664 PLPFSQFXSKALPXATQY-----ICLCLSNRSTARCGCR 563
           PLP+    +++ P    Y     + LC S   T RCGCR
Sbjct: 199 PLPYKSNCTESKPGLRLYSMEGCVALCASQELTRRCGCR 237


>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 173 QEVKDVKLENGNAPGASNGTSSKSEDSAYLSRKPSRRFPNLE 298
           Q V    L+N    G S+GT+S+  +S Y S + S +FP+LE
Sbjct: 259 QPVDGTVLDNITGLGNSHGTNSELSNSLY-SYQDSMKFPSLE 299


>SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)
          Length = 233

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 176 EVKDVKLENGNAPGASNGTSSKSEDSAYLSRKPSRRFPNLEIPSPMEKPSRSRKAT 343
           E +  K E     G + G   +  D A+   + +  F  LE+PSP + P + +KA+
Sbjct: 7   EAQAKKQEESAENGKNKGKGKRKRDEAHQVNRITFFF--LEVPSPSKSPVKKKKAS 60


>SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 475 EEQKKWNLTKLKEVDNLRPTGNYITRYKITGSR 573
           EE   W+L   + VDN + T  Y + Y+I  +R
Sbjct: 134 EENTYWSLAYYRWVDNYQETKKYYSNYRIPAAR 166


>SB_43457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = +2

Query: 14  NSISATTKSASLKRLSATDSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK 193
           N +  T +    +     D  A    S++      RK   E Q   A +EQV QE + VK
Sbjct: 369 NLLEQTNRQLHQRNQKLLDECASAFQSYQEAFAAQRKQKLEKQEALAELEQVKQEYEAVK 428

Query: 194 LENGNAPGASNGTSSKSEDSAYLSR 268
           +E  +    S    SK+   A +S+
Sbjct: 429 MEVSSL--KSKNADSKTLIKAQISQ 451


>SB_8032| Best HMM Match : IBB (HMM E-Value=0.46)
          Length = 191

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 176 EVKDVKLENGNAPGASNGTSSKSEDSAYLSRKPSRRFPNLEIPSPMEKPSRSRKAT 343
           E +  K E     G + G   +  D A+   + +  F  LE+PSP + P + +KA+
Sbjct: 7   EAQAKKQEESAENGKNKGKGKRKRDEAHQVNRITFFF--LEVPSPSKSPVKKKKAS 60


>SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)
          Length = 228

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 128 STEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDSAYLSRKPSRR 283
           S E  N D  +E   Q   +V+    N P     T++KS D     RKP  R
Sbjct: 94  SLEQANRDILIEDTQQN--EVQNSQRNVPRCELHTTTKSTDGTVARRKPKSR 143


>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 137 AQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDSAYLSRKPSRRFPNLEIPSPME 316
           A+N     ++     KD + +    P +   + S+  D   + RKP +   N   P+P +
Sbjct: 555 AENLFEVSDEENDNDKDNEEDRFFEP-SQEASGSEHSDEEVVDRKPPKNVTNKPPPAPAK 613

Query: 317 KPSR 328
           KPS+
Sbjct: 614 KPSK 617


>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1627

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 30  QRKV--RRLNACPLPTRLHI*YHHTNTLNTYK--EKCLLKHRIR 149
           QRK+     N CPLP  L + Y H  T  +Y   EK +L+  ++
Sbjct: 565 QRKIVLNAFNRCPLPLYLRLAYDHAVTWKSYTPLEKSVLEKNVQ 608


>SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11)
          Length = 314

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 298 DPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIXLQKTQIGKTRHRRLPEVSR*SRE 477
           DPK+    +   ++  WM  +K     KI+ T T+      Q+GKT+ R     S    E
Sbjct: 47  DPKTHAGYLNNVKTQIWMGTSKW--SAKISITGTSDPYVTVQVGKTKKR----TSTIPHE 100

Query: 478 EQKKWNLTKLKEVDN 522
              +WN T L + D+
Sbjct: 101 LNPEWNETFLLDEDD 115


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +2

Query: 209 APGASNGTSSKSEDSAYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG*SKPKSLMXRK*Q 388
           +P      S     S + S+ P RR P     SP    SRS+ A+   SK KS    K Q
Sbjct: 653 SPFRERRRSPPRRTSRWSSQSPDRRSPARIKSSPARSRSRSQSASPRHSKSKSPALSKVQ 712

Query: 389 QRT 397
            +T
Sbjct: 713 VKT 715


>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 21   SVQQRKVRRLNACPLPTRLHI*YHHTNTLNTYKEKCLLKHRIRMP 155
            ++Q   VRR  A P P R  + YH T    T   KC ++H +  P
Sbjct: 906  TIQSVIVRR--ALPWPPRYKV-YHATRANGTTNTKCTMRHALPWP 947


>SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 50  KRLSAT-DSLAYMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK 193
           K + AT  SLA +    +Y+    +++ST +   +  + QVT+++ DVK
Sbjct: 321 KEMQATKQSLALLKQDKEYLNKQVQELSTRSSLAEEQLGQVTKQLNDVK 369


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 149  DAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDSAYLSRKP 274
            DAA+ Q T E     LE+ +A  A N + +   D+  ++RKP
Sbjct: 1179 DAALAQETVEEPLKSLESSHAVNALNHSMNNGGDNTKINRKP 1220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,404,150
Number of Sequences: 59808
Number of extensions: 396984
Number of successful extensions: 1293
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)