Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0100
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   4.0  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    26   5.3  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   9.3  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    25   9.3  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 597 REVIKTCESSFQTTTTWSDYLS 662
           ++ I+ C + FQT   W DY+S
Sbjct: 17  QDAIRKCIALFQTVEQWPDYIS 38


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
 Frame = +3

Query: 492 NRPHHVRAPANTSWES--GASALEHALKL------ESDVTNSIREVIKTCESSFQT 635
           N P+H R P+N S  +  GA++ +  ++L      +S +++ ++     CE+S Q+
Sbjct: 65  NSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSSKLQSCKSACENSSQS 120


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 224 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 117
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 385 PPRLRELFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 504
           PP  R L FD         +  ++ L+MR    G +T +I
Sbjct: 290 PPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVI 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,842
Number of Sequences: 5004
Number of extensions: 50087
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)