Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0100
(784 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012) 33 0.20
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_32286| Best HMM Match : Extensin_2 (HMM E-Value=5.9) 29 4.2
SB_22940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 495 RPHHVRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFQTTTTWSDYLSGXFL 674
R H + P W SG A++ AL LE V ++ E+ KT E + SD++ FL
Sbjct: 59 REHAEKKPERDEWGSGLEAMQTALDLEKHVNQALIELEKTAEKN--GDAQMSDFIEDHFL 116
Query: 675 DEQLQ 689
EQ++
Sbjct: 117 TEQVE 121
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 284 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 406
+ C + KQI E+ AS Y +M YF + V+ PGF +
Sbjct: 10 EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGFHKF 50
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 284 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 406
+ C + KQI E+ AS YL+M +F D V PGF Y
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKY 237
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 388 PRLRELFFDAATEEREHATKLIDYLLMRG 474
P + F A+ EEREHA KL+ + RG
Sbjct: 232 PGFHKYFLKASHEEREHAEKLMKFQNERG 260
>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
Length = 126
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 302 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 406
+ KQI +E+ A YL+M +F D +N PGF +
Sbjct: 38 INKQINKELYAHYTYLSMAFHFDRDDINLPGFNKF 72
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 388 PRLRELFFDAATEEREHATKLIDYLLMRG 474
P + F +A+ EEREHA KL + L RG
Sbjct: 179 PGFHKYFMEASHEEREHAEKLAKFQLQRG 207
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 302 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 406
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 184
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 302 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 406
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKY 169
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 388 PRLRELFFDAATEEREHATKLIDYLLMRG 474
P + F A+ EEREHA KL + L RG
Sbjct: 164 PGFHKYFMKASHEEREHAEKLAKFQLQRG 192
>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 302 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 406
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 18 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 52
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 388 PRLRELFFDAATEEREHATKLIDYLLMRG 474
P + F A+ EEREHA KL + L RG
Sbjct: 47 PGFHKYFIKASHEEREHAEKLAKFQLQRG 75
>SB_32286| Best HMM Match : Extensin_2 (HMM E-Value=5.9)
Length = 535
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 494 PTSSRQGPRQHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLSNDYHL 646
PT+ + G R H V R+RP G+ + PG Q LR+ S+ YHL
Sbjct: 107 PTAPQPGARTHRVSPETRQYRSRPPKGQ--KDRIPG--QALRKVKSDPYHL 153
>SB_22940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 581 RHQQHPGGHQDLREQLSNDYHLVGLLVRGIPRRTVTRG 694
R + H GG +D + +S D V + + G+P R ++G
Sbjct: 140 RQENHTGGTRDSEKFISPDIKSVHVNIDGMPNRLYSKG 177
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,868,811
Number of Sequences: 59808
Number of extensions: 429327
Number of successful extensions: 1114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -