Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0100
         (784 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    31   0.053
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   4.6  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         24   6.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   6.1  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 30.7 bits (66), Expect = 0.053
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 482 QAP*PTSSRQGPRQHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQ 625
           Q P     +Q  +Q   GER + P+ R Q  + +HQQ     Q  R+Q
Sbjct: 277 QRPRQQQQQQQQQQQQQGERYVPPQLRQQRQQQQHQQQQQQQQQQRQQ 324


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 769 LSQGRRACPXNFLRGRXLCRRSPPLAPCNCSSRNXP 662
           +S  R +C  + L  + L   +PP+AP +      P
Sbjct: 675 MSSARESCGASALSRKLLTESAPPIAPMSPRPNRFP 710



 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 628 FKRLPPGRTTCPGXSSTNSYKG 693
           F R P G+TT    SS N Y G
Sbjct: 829 FDRPPAGQTTLMSYSSNNDYIG 850


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 286 DLLQHDEETDPGGSGRVNPVLS 351
           D LQ +E   P G+GR+  V S
Sbjct: 98  DQLQQEETDAPAGAGRIRKVRS 119


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 575  E*RHQQHPGGHQDLREQLSNDYHLVGLLVR 664
            E R Q  PG   DLR  L N+     L VR
Sbjct: 2038 EDRRQHSPGALTDLRSALVNNTIFASLAVR 2067


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,292
Number of Sequences: 2352
Number of extensions: 13424
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)