Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0100
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08440.1 68418.m00994 expressed protein                             31   0.86 
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    30   1.5  
At5g41320.1 68418.m05022 expressed protein                             29   3.5  
At4g25520.1 68417.m03680 transcriptional co-regulator family pro...    29   3.5  
At2g25970.1 68415.m03117 KH domain-containing protein                  28   6.1  
At4g25515.1 68417.m03679 transcriptional co-regulator family pro...    28   8.0  
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ...    28   8.0  
At2g16730.1 68415.m01919 glycosyl hydrolase family 35 protein si...    28   8.0  

>At5g08440.1 68418.m00994 expressed protein
          Length = 726

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 584 HQQ-HPGGHQDLREQLSNDYHLVGLLVRGIPRRTVTRG---QRRTSPAKXS 724
           HQ  HP G +      S D+H  G++  GI R TV  G   Q  +SP+  S
Sbjct: 129 HQHVHPNGEEATVSNRSEDHHSEGIMTNGIVRGTVGGGGTSQLSSSPSTIS 179


>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 394 LRELFFDAATEEREHATKLIDYLLMRG 474
           L + F +++ EEREHA KL++Y   RG
Sbjct: 132 LAKFFKESSLEEREHAEKLMEYQNKRG 158


>At5g41320.1 68418.m05022 expressed protein 
          Length = 515

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 400 ELFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITSGPPPTRRGRAA 543
           E   D  T  RE   +L+D++  + +L G+  + + S PPP +RG AA
Sbjct: 112 ETLLDELTASRE---RLMDWV--KTELCGAPNENVASRPPPNKRGVAA 154


>At4g25520.1 68417.m03680 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 748

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +2

Query: 401 NYSSMLRLKNASTRPSSLTTCS*GAS*QAP*PTSSRQGPRQHVVGERRISPRARPQAGE* 580
           NY SML  +NA   P+S T    G S Q P P +S Q P         +     P + + 
Sbjct: 563 NYQSMLMRQNAMNNPNSNTGKQEGFSSQNPTP-NSNQSPSSSSQQRHNLVTGGFPNSPQM 621

Query: 581 RHQQ 592
           + QQ
Sbjct: 622 QQQQ 625


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 379 GEPPRLRELFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITSGPPPTRRGRAAHQPSS 558
           G+P   R L  D  TE+ EHA +L++ ++  G+    + +    G  P + G  A  PSS
Sbjct: 273 GDPTPERTLQIDGITEQIEHAKQLVNEII-SGE--NRMRNSAMGGGYPQQGGYQARPPSS 329


>At4g25515.1 68417.m03679 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 471

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +2

Query: 401 NYSSMLRLKNASTRPSSLTTCS*GAS*QAP*PTSSRQGPRQHVVGERRISPRARPQAGE* 580
           NY SML  +NA    +S T    G S Q P   +S Q P         ++    P + + 
Sbjct: 286 NYQSMLIRQNAMNNQNSNTGNQEGFSSQNP-TLNSNQSPSSSSQQRENLATSGFPSSPQM 344

Query: 581 RHQQH 595
           + QQH
Sbjct: 345 QQQQH 349


>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 394 LRELFFDAATEEREHATKLIDYLLMRG 474
           L + F +++ EEREHA  L++Y   RG
Sbjct: 130 LAKFFKESSVEEREHAELLMEYQNKRG 156


>At2g16730.1 68415.m01919 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase BG1 GI:15081596 from
           [Vitis vinifera]
          Length = 848

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 418 ATEEREHATKLIDYLLMRGKLTGSVTDLITSGPPPTRRGRAAHQPSSTPSSW 573
           +++++E  TK +D    + ++T   T LI +G        + H P STP  W
Sbjct: 27  SSDDKEKKTKSVD---KKKEVTYDGTSLIINGNRELLYSGSIHYPRSTPEMW 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,585
Number of Sequences: 28952
Number of extensions: 287144
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)