Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0099
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   6.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.2  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   6.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   6.2  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 693 LVIKEFFLAKKVPRKVTTRGXLACGSPSVHSDVA 592
           L+ ++  LA   PR+    G   C S S + D+A
Sbjct: 91  LIFEKCELATCTPREPGVAGGDVCSSESFNEDIA 124


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 394 FMHSAERPVVRSYHPRDY 341
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 394 FMHSAERPVVRSYHPRDY 341
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 385 SAERPVVRSYHPRDY 341
           SA  P+VRSY P  Y
Sbjct: 281 SAATPLVRSYAPERY 295


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 380 RAAGGAKLPSAGLC 339
           ++  G ++PSAGLC
Sbjct: 99  KSCQGCEMPSAGLC 112


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
 Frame = +2

Query: 545 FCFAMIG-KSRHRRIQKATSL*TLGLPQAXYPLVVTFLGTFLAKKNSFITKRDSXRAVGF 721
           FC      +  + R+ KA S  T         +    L   L    + I  + S   +GF
Sbjct: 23  FCLVNFNHRESYFRLSKAKSFCTFVAALVYCSVTFFALSELLTDLATSILLKVSSLLIGF 82

Query: 722 CGSSPYGVNW 751
           C S   G  W
Sbjct: 83  CASIYVGTVW 92


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 380 RAAGGAKLPSAGLC 339
           ++  G ++PSAGLC
Sbjct: 47  KSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 380 RAAGGAKLPSAGLC 339
           ++  G ++PSAGLC
Sbjct: 230 KSCQGCEMPSAGLC 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,568
Number of Sequences: 336
Number of extensions: 3752
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)