Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0099
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    28   1.3  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    27   2.2  
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    27   3.9  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    26   6.9  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.1  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   9.1  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.1  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/64 (21%), Positives = 33/64 (51%)
 Frame = -3

Query: 374 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSNNVTLLVAFRIQNARRDVEA 195
           A  A+  +A     A +AEA   E+ K+++  EP+++  +  + ++ +   +++R  V  
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 194 HLDR 183
            + R
Sbjct: 149 WVHR 152


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 518 WVNNPTLGEFCFAMIGKSRHRRIQKATSL*TL-GLPQAXYPLVVTFLGTFLAKKNSFITK 694
           +V+   L  + FA I  S     Q+  S   L  +P   +P++   + T L  K SFI  
Sbjct: 120 YVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLIMTTILVPKASFI-G 178

Query: 695 RDSXRAVGFC 724
             S   +G+C
Sbjct: 179 HASGAVMGYC 188


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 535 AWRILLRNDREEPTSKDSKSNVAMNAWAATSQXSPGGNF 651
           +W +  RN  EEPTSK   S + +   A  S    G  F
Sbjct: 2   SW-LFTRNKEEEPTSKIDSSELQVPTEATASDILSGSEF 39


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 587 ESFDVGSSLSLRSKIRQALDCSPIKR 510
           E  D+ S LS+R    + +DC+PI+R
Sbjct: 133 EVCDLSSMLSVRKFATKWIDCTPIRR 158


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 446 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 297
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 52  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR 168
           S    +E   ST+YS P    E  PD   + + V+ KN+
Sbjct: 243 SNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNK 281


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 86  VDDFRSWRGVVLGRAASCCDLLRLS 12
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,153
Number of Sequences: 5004
Number of extensions: 65529
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)