Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0099
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 31 0.77
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.1
11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042 29 4.1
06_01_0029 - 288676-289287,289441-289733,289842-290031 28 7.2
10_03_0034 + 7257033-7257045,7257074-7257104,7257880-7258009,725... 28 9.5
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 28 9.5
07_03_1086 + 23858419-23859423,23859527-23859610 28 9.5
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 28 9.5
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249... 28 9.5
01_06_0695 - 31292622-31293317 28 9.5
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +1
Query: 49 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HXSPRSKWASTS 207
PS TP ER S+D PR Y R+RD K++ SK +S
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRDYSHSKHERSS 417
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 404 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 306
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042
Length = 268
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -3
Query: 398 LVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSNNVTLLVA 231
L H L AAGGA+ G +N S S+ G L V GG N +T +A
Sbjct: 136 LAHPLLLAAGGARGGGGGCVVNISSVAGSV---GMPALAVYSMTKGGMNQLTRSLA 188
>06_01_0029 - 288676-289287,289441-289733,289842-290031
Length = 364
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = +1
Query: 523 EQSNAWRILLRNDREEPTSKDSKSNVAMNAWAATSQXSP 639
E+ N W D++ PT + A W AT + P
Sbjct: 75 EEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKP 113
>10_03_0034 +
7257033-7257045,7257074-7257104,7257880-7258009,
7258423-7258751,7259923-7260026,7260138-7260476,
7261074-7261199,7261366-7261489,7261615-7261723,
7262171-7262251
Length = 461
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -3
Query: 83 DDFRSWRG---VVLGRAASCCDLLRLSCR 6
D FR W G +V R +CCD+L +S R
Sbjct: 380 DKFRGWVGFTVLVSHRITACCDILLMSSR 408
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 134 GAVMHVLRKKTDSIX----LRDPNGLRRRVSRFECETRLVKSH 250
G V+ L + TDS+ L +P+GL RRV F E+++ H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = -3
Query: 464 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 300
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 299 GKDMLTVEPRESGGS 255
G L V E+GG+
Sbjct: 189 GAIPLLVSLLETGGA 203
>06_03_1318 -
29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/84 (27%), Positives = 34/84 (40%)
Frame = -3
Query: 626 LVAAQAFIATLLFESFDVGSSLSLRSKIRQALDCSPIKRDVSWV*TVVRQVSFTLLMACR 447
L +A F+A L + + L L +R+A D P+K VSW + +L R
Sbjct: 138 LPSAAPFVANSLIHMY---TELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDAR 194
Query: 446 CDSNTAQYERNRSFGHLVHALGRA 375
A S+ L+ A RA
Sbjct: 195 LLLAQAPVRDVISWTSLIAAYSRA 218
>05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,
2490996-2491085,2491926-2492061,2492159-2492418,
2493448-2493846,2494482-2494661,2494728-2494922,
2496614-2496678,2497186-2497321,2497442-2497483,
2498351-2498689
Length = 1087
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 7 RHESLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTE 117
RH+SL DA++P TP + R + YS+ + +
Sbjct: 1011 RHKSLVNIADDASIPMWTPEKVRAGVSSYSKDENEDD 1047
>01_06_0695 - 31292622-31293317
Length = 231
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 31 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 135
Q D PS++ SST S P HR L P R
Sbjct: 13 QQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,278,363
Number of Sequences: 37544
Number of extensions: 483194
Number of successful extensions: 1229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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