Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0096
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    61   9e-11
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   1.8  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   4.2  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   5.5  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   7.3  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    24   9.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 60.9 bits (141), Expect = 9e-11
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +1

Query: 307 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFI 453
           + E G G G TVYPPLSS  +H G ++DLAI SL L GISS +G++N I
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLI 172



 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +2

Query: 77  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 250
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 251 NI*DFDSYPPPL 286
           N   F   PP L
Sbjct: 105 NNFTFWLLPPAL 116


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 352 LSSNIAHRGRSVDLAIFSLHLAGISSIIGAINF 450
           ++ NI + GRS  + +  L +AGIS I  A+++
Sbjct: 109 VAPNIYYMGRSSVINVGGLRIAGISGIYSAMDY 141


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 267 TPTPLPYIINFKKNCRKWCRNRMNS 341
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = -1

Query: 446 LIAPIIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINN 288
           LI+P    IP   ++K+A + D+P C+ + ES   ++   P P +T + ++++
Sbjct: 30  LISPPPSPIP---NDKVASTVDVPKCSTIPESPKDSI-VEPKPTATPVAQLHS 78


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 89  DFLIQLELKVLKMFQL 42
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 389 STDLPLCAILDESGG*TVHPVPAPFST 309
           +TDL +   +  SGG T+H  P  FST
Sbjct: 11  NTDLVMRTKICPSGGETIHGEPDGFST 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,844
Number of Sequences: 5004
Number of extensions: 26535
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)