Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0096
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        25   0.51 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.4  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 212 LILGAPDIAFPRINI*DFDSYPP 280
           LI   PD +FP + + DF+S+ P
Sbjct: 127 LINQIPDKSFPGVGVIDFESWRP 149


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
          opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 1  GWNIIFYFWYLIRNNWNIF 57
          GWN+   +  L+R +W  F
Sbjct: 31 GWNVPPEYSDLVRPHWRAF 49


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 387 YGSSSMCDIR*KWG 346
           YGSS  CD R K G
Sbjct: 164 YGSSDGCDARKKKG 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,479
Number of Sequences: 438
Number of extensions: 2436
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)