Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0095
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    33   0.044
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   5.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   5.1  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   5.1  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   5.1  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   8.9  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    25   8.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   8.9  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +3

Query: 252 EFSLSILSWT*IRVVSVTSHPSAPNTPMSSSWSRLAV---GLKAAPSTHTWWPR--RALG 416
           +F +S++S+   R   + S+P   NTP++       V   G     S H +WP+   +LG
Sbjct: 193 KFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASLG 252

Query: 417 CPSSEALS 440
            PS +A+S
Sbjct: 253 FPSPDAIS 260


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 362 WAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 481
           W + G   + +  + S   S++       + KYDFDGL +D
Sbjct: 189 WQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 213 SGYTN-PRGCLRCHNVQRRVGTPPNY*SNKRCALCCPTELMRRNSPGQPTSQISLAFST- 40
           SGY +  R C RCH+ ++++    N+  + R   C   + +R  S     S     F   
Sbjct: 92  SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFCNDCKQVRHPSRSSDESADYHNFEVD 150

Query: 39  VTVRP 25
           VT++P
Sbjct: 151 VTIKP 155


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 323 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 421
           +HP  KF+V VGG+     ++ H    K T  S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 401 QKSTRMSFIRSVVDFLKKYDFDGLDLD 481
           +   R  F   V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 179 HRRHPRGFVYPLDLFLYWRHREIKRILIIDPELDVDKSGFRN 304
           HR +    V+P+D+ +      +  +L +D +L     GFRN
Sbjct: 532 HRSYGTPPVHPIDIIIATNMAGMTIVLCVDYDLGNSHHGFRN 573


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 17  GXHGRTVTVENASDICDVGCPGELRR--ISSVGQQSAHRLLLQ*LGGVPTRRWTLWHRRH 190
           G  GR +  EN       G PG L+   +  +  +  H+ LL+   G    R  LW RR 
Sbjct: 64  GISGRKL--ENHKYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRM 121

Query: 191 PRGFVY 208
            R ++Y
Sbjct: 122 KRLYIY 127


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 475 IQTVEVIFLQEVDNASD 425
           + TVE+  LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,977
Number of Sequences: 5004
Number of extensions: 72531
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)