Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0095
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       40   0.002
04_03_0649 - 18402976-18403220,18403305-18404499                       39   0.005
10_08_0011 + 14088375-14089241                                         33   0.33 
10_08_0009 + 14075929-14076789                                         31   1.3  
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141...    29   3.1  
10_08_0007 + 14044844-14045767                                         28   7.1  
09_04_0225 - 15855544-15855727,15855796-15856406                       28   7.1  
03_06_0754 - 36025579-36027000                                         28   7.1  
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235     28   9.3  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 383 YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 493
           +S M ++K+ R +FI S ++  +   FDGLDL W +P
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
 Frame = +2

Query: 248 KRILIIDPELDVDKSGFRNFT-SLRSKHPDVKFMVAVG-GWAEGGSK----------YSH 391
           +R L++ P+     S   +F+ ++++K+  VK ++++G G   GG+           ++ 
Sbjct: 78  RRTLLLPPD-PAAASLLGDFSRAVKAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAA 136

Query: 392 MVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAADRVA 514
           M A  ++R +FI + V   ++  FDGLD+ W +P +A  +A
Sbjct: 137 MAADPASRAAFIGAAVKVARENGFDGLDVAWRFPASAVEMA 177


>10_08_0011 + 14088375-14089241
          Length = 288

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 260 IIDPELDVDKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRS 433
           +  P  D       +  ++++ HP+V  MV +GG +  +    +    +  S   + + S
Sbjct: 56  VFSPYWDTANLSPADVAAVKAAHPNVSVMVGLGGDSVQDTAKVFFSPTSVDSWVANAVAS 115

Query: 434 VVDFLKKYDFDGLDLDWEY 490
           V   +  Y  DG+D+D+E+
Sbjct: 116 VSGIIDAYGLDGVDVDYEH 134


>10_08_0009 + 14075929-14076789
          Length = 286

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +2

Query: 317 RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVD----FLKKYDFDGLDLDW 484
           ++ HP++  ++A+GG     +  +   A  S+  +++R+  D     +  Y  DG+D+D+
Sbjct: 75  KAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGVDVDY 134

Query: 485 EY 490
           E+
Sbjct: 135 EH 136


>03_02_0687 +
           10413338-10413430,10413538-10413934,10414040-10414168,
           10414370-10414517,10414647-10415925
          Length = 681

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 508 PVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAF 368
           PV GT +  V+   V  I  Q+    + E HP  + G+H  VL   F
Sbjct: 550 PVKGTKLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 596


>10_08_0007 + 14044844-14045767
          Length = 307

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 311 SLRSKHPDVKFMVAVGGWAEGGSK-YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWE 487
           S++  +P+V+  V++GG        + ++ +  S   + + S+   ++  + DG+D+D+E
Sbjct: 95  SIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQDNNLDGIDIDYE 154


>09_04_0225 - 15855544-15855727,15855796-15856406
          Length = 264

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 726 GENRPNLPRRSYDITWNSVQFLTQLWYMISLHQPEISKRYGS 601
           G NR NL  R YDI W+  +F       I++H+ + ++R+ +
Sbjct: 205 GRNRYNLKPRMYDINWDMDEFRPN---TIAVHRLKNNRRWAA 243


>03_06_0754 - 36025579-36027000
          Length = 473

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261 LSILSW-T*IRVVSVTSHPSAPNTPMSSSWSRLAVGLKA 374
           ++I SW T +R   ++S PS P++  SSSW    VG+ A
Sbjct: 1   MAIESWLTKVRSAIISSKPS-PSSSSSSSWRSKTVGILA 38


>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
          Length = 416

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 326 HPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSF 424
           +P   ++ A GG   GG+ YSH  A  +   +F
Sbjct: 93  YPTSHYLAAAGGAGGGGNPYSHFTAAAAAGSTF 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,780,578
Number of Sequences: 37544
Number of extensions: 572273
Number of successful extensions: 1566
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)