Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0095
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 387 HTWWPRRALGC 419
           HTWWP   L C
Sbjct: 163 HTWWPYDILNC 173


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 372 PSAQPPTATMNLTSGCLERRDVKL 301
           P  QPP+A  NLT   +++  V L
Sbjct: 313 PCTQPPSAPQNLTVNFVDQSTVFL 336


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 665 NWTLFHVMSYDLRGKLGRFSPMCI 736
           +W LF  MS+ L    GRF P  +
Sbjct: 327 SWALFKAMSHMLCIGYGRFPPQSL 350


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 665 NWTLFHVMSYDLRGKLGRFSPMCI 736
           +W LF  MS+ L    GRF P  +
Sbjct: 295 SWALFKAMSHMLCIGYGRFPPQSL 318


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 607 RQQSAPILYRL**TPSLTLGRNTRTCLYRRRSHPVSG 497
           R + APIL R   TP+ T    T  C       P++G
Sbjct: 194 RDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTG 230


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 354 LAVGLKAAPSTHTWW 398
           LAVGL A  +   WW
Sbjct: 11  LAVGLGAGQNNKGWW 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,497
Number of Sequences: 438
Number of extensions: 5405
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)