Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0094
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 29 0.99
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 29 0.99
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 2.3
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 26 5.3
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 5.3
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 5.3
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 26 5.3
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 25 9.3
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 9.3
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 28.7 bits (61), Expect = 0.99
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -3
Query: 223 RPGYSAEL-IVINVALEAISDNSNCQQMKRYIQDTRHQMQISDDETYSA*FDSTAHVS 53
RP Y+ L I+ N +E M ++IQD + + D YS F H S
Sbjct: 252 RPAYAKTLEIIANKGIEPFYRGELTNSMVKFIQDNGGIVTVEDFGNYSTVFADALHTS 309
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 456 SRTDANVPQPLHSKGRDAIIYFGY-QPHFFDIFGNETYWFLKLL 584
SRT + P +H G I+Y+ + +PH N + WF +L
Sbjct: 322 SRTTSGQPIEVHVPGEHPILYYIHKRPHLDYFLSNVSQWFRLIL 365
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +2
Query: 563 LLVPETP*HIHRRCLHYNHSEIHKSTALGKGQ----LVSQRSPLLTSNA 697
LL + P I ++ L + +H++ A+GK Q L+SQR+PL TS++
Sbjct: 125 LLCDKAPELIRKKDLQ-GQTPLHRAAAVGKIQVVKYLISQRAPLNTSDS 172
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 593 EYVKEFQEPVSFITEYIEEMRLVSEINDCITTFTMERLRNIRIG 462
++ K+F +P S E +++++ + CI R +NIR G
Sbjct: 1259 KFQKDFLQPFSHAMENSQDLKIKDLVLRCIDQMIKARYQNIRSG 1302
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 500 TFTMERLRNIRIGSGFLLY 444
TFT + L NIR G+G L Y
Sbjct: 132 TFTFKPLHNIRSGAGLLAY 150
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 276 WVEAVGSGFRTRSKGSTTAQGIALNLS*LTSHWKPSVT 163
+ V SG R +SKG++ G +L+ S +T+ W + +
Sbjct: 6 FTNVVRSGLRFQSKGASFKIGASLHGSRMTARWNSNAS 43
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 340 PRCYPGILHVYL-VDILNFLINLIWLRIVVS 429
P+ + I V + V +L+F++N+IWL I VS
Sbjct: 197 PKWFRYIFRVSVAVILLDFVLNMIWLPIAVS 227
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 558 ETYWFLKLLDIFIAVVFITIIQKYTKALRLEKGN 659
+T F+KL + + + TII K + L + KGN
Sbjct: 3 KTLIFIKLSSLNECIKYSTIISKIARELSIHKGN 36
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 213 YPGRLWS-LYSWF*TRNPRLLPIPGDI 290
+P +WS LY W ++NP +P D+
Sbjct: 173 HPLSIWSQLYDWIDSQNPSQYRLPDDL 199
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 668 EIPVALFQAQCFCVFLNDCNEDNGDE 591
EIP +LF +Q VFLN ED+ D+
Sbjct: 728 EIPESLFLSQNVFVFLNVSLEDDFDQ 753
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,825
Number of Sequences: 5004
Number of extensions: 77755
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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