Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0094
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0225 - 1650665-1652743 30 1.8
02_05_0341 - 28115835-28116404 30 1.8
10_08_0892 - 21347588-21348346 29 5.5
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 28 7.3
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 7.3
08_01_0338 + 3000897-3002447 28 7.3
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853... 28 7.3
10_02_0156 + 5946160-5946423,5946558-5947063,5947430-5947486,594... 28 9.6
>07_01_0225 - 1650665-1652743
Length = 692
Score = 30.3 bits (65), Expect = 1.8
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Frame = +1
Query: 79 THYMFRHRLSAFGVLCLGYSVSFADSCYCH*WLPXXXXXXXXXXYTLGGCGAFTPGS--K 252
T + F L +FG+ C ++ + D + T G T G+ +
Sbjct: 24 TKFFFLFLLVSFGINCASFTNTSDDQLLYLGFTSANLITDDTTVVTSNGLLELTNGTINR 83
Query: 253 PGTHGFYPFPGTFRRQYNMYVE---YTSIIAEPRCYPGILHVYLVDILNFLINLIWLRIV 423
G H FYP P FR+ +N V + + A YP + L +++ IN +
Sbjct: 84 KG-HAFYPSPLHFRKSHNNKVHSFAVSFVFAIRSSYPRMSLHGLAFVVSPSINFS-NALA 141
Query: 424 VSYLGALYKRN 456
+ YLG L +N
Sbjct: 142 IQYLGLLNSKN 152
>02_05_0341 - 28115835-28116404
Length = 189
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -1
Query: 351 IASGLCDNRCVLNIHIVLTPKCPREWVEAVGSGFRTRSKGSTTA 220
+A LC CVL + +V C R W A G G G A
Sbjct: 26 LAGLLCALICVLGLGLVARCACTRRWARAAGGGTAAGGGGGGAA 69
>10_08_0892 - 21347588-21348346
Length = 252
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 402 INEKIEDVNQVHVENTGIASGLCDNRC 322
+ ++ ED ENT IA G D+RC
Sbjct: 212 LEDRTEDKGSPETENTSIAGGASDSRC 238
>11_01_0466 +
3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 577 NSLTYSSPLSSLQSFRNTQKHCAWKRATGISEKPPSYVECLIQTASLQG 723
N++T+ P SL S+ ++ C+W+ + S+ PP + +L G
Sbjct: 41 NAITHD-PQKSLMSWNDSNHLCSWEGVSCSSKNPPRVTSIDLSNQNLAG 88
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 635 FCVFLNDCNEDNGDEYVKEFQEPVSFITEYIEEMRLVSEIN 513
+C+ + DEY KE QE + F Y+ ++R ++ N
Sbjct: 546 WCIMQSKIKSGAVDEYKKEVQEMLEFAESYMRKVRTSNQDN 586
>08_01_0338 + 3000897-3002447
Length = 516
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 719 WRLAV*IRHST*EGGFSEIPVALFQAQCFCVFLNDCNEDN-GDEYVKEFQ 573
W L V I H EGG + FQ FC+ + C D GD V+E +
Sbjct: 166 WVLDVLISHVRGEGGAPVTVMEPFQYAMFCLLVYMCFGDRPGDARVREIE 215
>07_03_0108 +
13481249-13481464,13484556-13484693,13485320-13485388,
13485462-13485599,13485685-13485802,13486265-13486347,
13486921-13487013,13487801-13487969,13488056-13488129,
13488448-13488633,13490009-13490101,13490469-13490534,
13490618-13490785,13491199-13491319,13492072-13492141,
13492389-13492476,13492565-13492685,13492964-13493157,
13493239-13493347,13493488-13493643,13493858-13493957,
13494115-13494288,13494549-13494694,13494796-13494860,
13495013-13495018
Length = 986
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 385 LNFLINLIWLRIVVSYLGALYKRNPEPMRMFLSLSIVKVVMQSF 516
LN + W+RI++ Y Y++ P P R+F ++ ++ + M F
Sbjct: 432 LNSQLTCGWVRILL-YANKAYEQIPGPRRLFFTVMLLLLFMHYF 474
>10_02_0156 +
5946160-5946423,5946558-5947063,5947430-5947486,
5947664-5947902,5948200-5948318,5948400-5948486,
5951757-5951816
Length = 443
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 330 NRCVLNIHIVLTPKCPREWVEAVGSGFR 247
N VL I++ L+P C R W G FR
Sbjct: 213 NLSVLAIYVRLSPACRRTWTGFSGEAFR 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,154,571
Number of Sequences: 37544
Number of extensions: 507457
Number of successful extensions: 1211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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