Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0094
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)                33   0.34 
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           32   0.60 
SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)                      30   1.8  
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 29   3.2  
SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)                 29   3.2  
SB_10988| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 29   4.2  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  

>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 678 PFLRRMPDSNGKPPRFSQRSPXEGKXQGHRPSME 779
           PF R  P   G PP   QR P +G  Q H PS +
Sbjct: 492 PFYRGPPPPRGMPPPPRQRMPSQGPPQVHYPSQD 525


>SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)
          Length = 322

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 262 HGFYPFPGTFRRQYNMYVEYTSIIAEPRCYPGILHVYLVDILNFLINLIWLRIVV 426
           + F PF    RR YN+ +  T  I        I+ + + +I+  LIN+I++R ++
Sbjct: 226 YNFVPFKRLVRRSYNIVITITITIKFTNIDTIIIVINITNIIIILINIIFIRGII 280


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 32/123 (26%), Positives = 55/123 (44%)
 Frame = -1

Query: 411 PNQINEKIEDVNQVHVENTGIASGLCDNRCVLNIHIVLTPKCPREWVEAVGSGFRTRSKG 232
           P +I   I      H+E   +  G C  +   N+H++ + KC  EW + V     T +  
Sbjct: 441 PAKIAPNITRTVPPHLERKPVKCGRC-TKWYRNVHLLKSHKCAPEWYQPVPQALVTLAAS 499

Query: 231 STTAQGIALNLS*LTSHWKPSVTIATVSK*NAISKTQDTKCR*AMTKHIVRNLIPQHMLV 52
           ST +    + L  LT    P V ++ + + + I  +Q TK + A T    + L  QH+L+
Sbjct: 500 STDSSPERVLLQ-LT----PEV-VSKLKEASDIVLSQ-TKEKSAATTSQTKTLNEQHVLL 552

Query: 51  TCR 43
             +
Sbjct: 553 AIK 555


>SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)
          Length = 187

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 592 SSPLSSLQSFRNTQKHCAWKRATGISEKPPSYVECLIQTASLQGFPKGVXPKERXRVIDH 771
           +S LSS+   R+ ++   +  +T  S  P S     IQ  ++Q  P+G    +R +  DH
Sbjct: 85  ASSLSSIPPSRHDKRRRRYSSSTAASSVPNSRPSLDIQAFTIQSLPEGRVVADRVQYDDH 144


>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 517  ISDTNRISSIYSVMKLTGS*NSLTYSSPLSSLQSFRN-TQKHCAWKRATGISEKPPS 684
            ++D   ++S Y +  LT + N       +  L+S  N T ++C ++ +T ++ KPP+
Sbjct: 1007 VADLQSLNSDYVLQDLTPAANEPHQEHSIRDLKSTENRTVEYCDFQGSTSVNGKPPA 1063


>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
          Length = 332

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 116 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW 220
           + C L IA  L+TVAI T    C +NY  FS   W
Sbjct: 73  IICSLAIADLLVTVAIGTTEMLCTLNYCTFSCNWW 107


>SB_10988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -2

Query: 701 IRHST*EGGFSEIPVALFQAQCFCVFLNDCNEDNGDEYVKEFQEPVSFITEYIEEMR-LV 525
           + +ST E   S +   LFQ++C  +  +D  ED     + EFQ+  S++T    + R  +
Sbjct: 134 VSNSTLEVSNSTLEDELFQSRCVVLVYSDICEDYLQHDIHEFQK--SYVTFDGTQFRGEM 191

Query: 524 SEINDCITTFTM 489
           SE++D  T F +
Sbjct: 192 SELDDAGTYFDL 203


>SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 235 FTPGSKPGTHGFYPFPGTFRRQYNMYVEYTSIIAEP--RCYPGI-LHVYLVDIL 387
           F  G +P  +   PF GTFR   + Y  ++++   P     PGI L +++VDI+
Sbjct: 75  FPGGKEPDANNAIPFQGTFRASPHSYF-HSNLPTTPSDEATPGILLKLFVVDIV 127


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 58   HVLWNQITHYMFRHRLSAFGVLCLGYSVSFADSCYCH*WL 177
            H++ N   HY F   L +  ++ +G  V    SCY   W+
Sbjct: 1103 HIVLNSRKHYFFLKVLMSLNMVIVGVGVLVTISCYLAIWI 1142


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 620 SEIHKSTALGKGQLVSQRSPLLTSNA*FKRQASKVFPKESXRRKEXGSS 766
           S+  ++T+ G    +S+R  LLT      R +S+  P+ + R    GSS
Sbjct: 419 SQAERTTSSGSSDKLSRRRGLLTLTLAVPRSSSQRTPRSAQRTPRSGSS 467


>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 593  EYVKEFQEPVSFITEYIEEMRLVSEI 516
            EYV +F+  VS +TEY+ +  ++  I
Sbjct: 1030 EYVPDFEIIVSIVTEYVPDFEIIMSI 1055


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,772,074
Number of Sequences: 59808
Number of extensions: 590712
Number of successful extensions: 1490
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)