Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0094
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22970.1 68414.m02870 expressed protein                             29   3.5  
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (...    29   4.6  
At3g11310.1 68416.m01375 hypothetical protein                          28   6.1  
At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi...    28   8.0  
At3g03470.1 68416.m00345 cytochrome P450, putative similar to cy...    28   8.0  

>At1g22970.1 68414.m02870 expressed protein
          Length = 357

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 620 NDCNEDNGDEYVKEFQEPVSFITEYIEEMRLVSEINDCITTFT-MERLRNIRIGSGFL 450
           +D ++D GD+   E  E  + +TE + E  +V  I + I   T M ++ N +  SGF+
Sbjct: 204 DDDDDDLGDDLSPEEMEVATMVTEIVSETIMV--IKELIRVITGMIKMENPKDNSGFV 259


>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
           (IRX1) nearly identical to gi:12836997
          Length = 985

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 6   VQFFQLETFSQWFYTLLTCAVESNYALYVSSSLICIWCLVSWI 134
           V   +L   + +F   +T  V+S Y L+++S +  IW  VSW+
Sbjct: 186 VIIMRLIILALFFNYRITHPVDSAYGLWLTSVICEIWFAVSWV 228


>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 471 SHRFGISLI*CSQIGHDNPQPNQINEKI-EDVNQVHVENTGIASGLCDNRCVLNIHIVLT 295
           SH   + L+    +  + P+P + N    ++   + VE+    +GL   R  L  H  +T
Sbjct: 180 SHEIFVDLLFTESLKENRPKPARRNGYYAKETWNMMVESFNQKTGLRYTRKQLKNHWNIT 239

Query: 294 PKCPREWVEAVGS 256
               R W +AVGS
Sbjct: 240 RDAWRRWCQAVGS 252


>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 938

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = -3

Query: 217 GYSAELIVINVALEAISDNSNCQQMKRYIQDTRHQMQISDDETYSA*FDSTAHVSNV 47
           G S  +   N  +  +SD    +++ +++ + + +    DD TY+A     A + N+
Sbjct: 743 GISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNM 799


>At3g03470.1 68416.m00345 cytochrome P450, putative similar to
           cytochrome P450 89A2 GB:Q42602 [Arabidopsis thaliana]
          Length = 511

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 305 ICMLSTHRLSQSPDAIPVFSTCTWLTSSIFS 397
           I   STH+L   P   PV     WL  + FS
Sbjct: 23  IFFFSTHKLPPGPPRFPVIGNIIWLKKNNFS 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,737
Number of Sequences: 28952
Number of extensions: 409163
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)