Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0092
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 54 3e-08
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 51 2e-07
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 50 5e-07
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 48 2e-06
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 40 5e-04
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 31 0.24
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 28 1.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.9
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.1
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 53.6 bits (123), Expect = 3e-08
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 542 PLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVEKC 703
P+GV G I +NFP + W A A+ CG+ + K +E TPL A+ +TK V +C
Sbjct: 160 PIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSALCLTKFVPEC 213
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 321 RGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEV 434
RG + ++ D + +NL+ L + +L+ GK + A G+V
Sbjct: 87 RGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDV 124
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = +2
Query: 512 PGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKI 691
P + +I P+GVVGIIT +NFP A+ A+ G V +P+ TP A+A+ K+
Sbjct: 149 PQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALAKL 208
Query: 692 VEKCAAEGTTLTWWPSHSTVPSG 760
E+ L ++S G
Sbjct: 209 AERAGVPAGVLNMVTANSPSEHG 231
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 485 PRYCVPV-RRPGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETT 661
P VP+ PG EK P GV+G+IT +NFP+ + W A+ G+ V KPSE
Sbjct: 142 PTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSELA 201
Query: 662 P 664
P
Sbjct: 202 P 202
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +2
Query: 512 PGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKI 691
P + K P+GV G I +N+P+ + GW A A+ G+ + K +ETTPL + +
Sbjct: 144 PEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLYFATL 203
Query: 692 VEK 700
VE+
Sbjct: 204 VEE 206
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 524 LIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVEK 700
LI P+GV +IT +NFP A+ A+ G ++ P+ TP V + + ++ ++
Sbjct: 148 LISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGLVRLAQE 206
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 30.7 bits (66), Expect = 0.24
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +2
Query: 500 PVRRPGHVLIE------KWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETT 661
P +RP +L K+ PLGV+ + ++N+P+ A+ G+A V K SE T
Sbjct: 107 PTKRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELT 166
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 626 GDATVWKPSETTPLV 670
G T+W PS TTPLV
Sbjct: 245 GQVTLWSPSSTTPLV 259
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 765 LPPDGTVECDGHQVNVVPSAAHFSTILVTATATSGVVSDGFQT-VASPQTIAIALFHPKT 589
LPP G + NV+PS F + + T + S + + T V S + L +P T
Sbjct: 323 LPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPMLMNPST 382
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 360 ENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLSRTLPGTVFP 503
++L P GKL+SL+ L + +G + E + DL++ TLP + FP
Sbjct: 174 DDLNP-GKLISLQNLYNLLKKLGGIAEPLPQLDLSISSLYTLP-SFFP 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,481
Number of Sequences: 5004
Number of extensions: 70976
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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