Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0092
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 63 2e-10
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 54 1e-07
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 52 4e-07
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 50 3e-06
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_36729| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-06
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) 47 2e-05
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 38 0.009
SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16) 38 0.012
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.012
SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36) 30 1.8
SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 30 1.8
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) 30 1.8
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012) 29 3.2
SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_11680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13) 29 5.5
SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09) 28 7.3
SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 28 9.6
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012) 28 9.6
SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05) 28 9.6
SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2) 28 9.6
SB_52175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_3940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 103 bits (246), Expect = 2e-22
Identities = 48/69 (69%), Positives = 54/69 (78%)
Frame = +3
Query: 309 PAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLSRTLP 488
P P RGEVVRQIG ALRE L PLGKL+SLE+GKI PE +GE+ EYI VCD A+GLSR
Sbjct: 70 PGPKRGEVVRQIGHALREKLTPLGKLLSLEVGKIFPEGVGEIQEYIDVCDYAVGLSRMFD 129
Query: 489 GTVFPSDVP 515
G VFPS+ P
Sbjct: 130 GKVFPSERP 138
Score = 89.0 bits (211), Expect = 4e-18
Identities = 33/48 (68%), Positives = 41/48 (85%)
Frame = +2
Query: 500 PVRRPGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVW 643
P RPGH L+E+WNP+G VG+ITAFNFPVAVFGWN+AI+M CG+ +W
Sbjct: 134 PSERPGHALLEQWNPVGTVGVITAFNFPVAVFGWNTAISMTCGNVNIW 181
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +2
Query: 80 STAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANGEVIKSYSPANGKVIAEV 235
S A LIE+ KYS+L++LGLK +N GV+NG W GE + P G+V+ ++
Sbjct: 33 SGALLIENEKYSWLRELGLKADNPGVYNGTWGGKGE---TPGPKRGEVVRQI 81
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = +2
Query: 509 RPGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTK 688
RPG + + P+GVVGIIT +NFP A W A A+ G+A VWKP+ P A A+T+
Sbjct: 130 RPGIEIETRREPVGVVGIITPWNFPTATGAWKIAPALAFGNAIVWKPANQVPASAWALTE 189
Query: 689 IVEK 700
I+ +
Sbjct: 190 IISR 193
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 321 RGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGE 431
R V+ IGD L LG +++ E GK L E +GE
Sbjct: 67 RYSVLMAIGDELIARKDELGAILAREEGKTLAEGVGE 103
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +2
Query: 542 PLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIV 694
PLGVVG I A+N+P+ W A A+ CG+ V+KPS TP+ AVA+ I+
Sbjct: 410 PLGVVGGIGAWNYPIQTACWKIAPAIACGNTIVYKPSPLTPMNAVALADIL 460
>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1485
Score = 52.4 bits (120), Expect = 4e-07
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +2
Query: 542 PLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVEK 700
P+GVVG IT +NFP+ + G A A+ CG + KP+E TPL A+ + +V++
Sbjct: 1337 PVGVVGAITPWNFPLLMEGLKLAPALACGCVVILKPAEQTPLTALYLASLVKE 1389
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 306 LPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLSRTL 485
+ A ARG + ++ D + L +L S + GK++ EA +V I G + +
Sbjct: 1259 MDASARGHFLYKLADLCERDADYLARLESYDGGKVINEAKIDVQGMIGCFRYYAGWADKV 1318
Query: 486 PGTVFPSDVP 515
G P+D P
Sbjct: 1319 TGKTIPADGP 1328
>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 421
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +2
Query: 497 VPVRRPGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAV 676
+P PG ++ P+GV IT +NFP+A+ ++ A+ CG + +PS TPL A+
Sbjct: 66 IPSNNPGQKVLITKEPVGVCASITPWNFPIAMLVRKASSAIACGCTMIARPSGQTPLSAL 125
Query: 677 AVTKIVEK 700
A+ ++ K
Sbjct: 126 ALGELALK 133
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = +3
Query: 312 APARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLSRTLPG 491
A R ++R+ D + EN+ + K+++LE GK L EA GEV+ + + ++ + G
Sbjct: 4 AKERSIILRKWYDLILENIDDIAKIITLESGKPLLEARGEVLYAANYIEFFSEEAKRVYG 63
Query: 492 TVFPSDVP 515
+ PS+ P
Sbjct: 64 DIIPSNNP 71
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/92 (28%), Positives = 47/92 (51%)
Frame = +2
Query: 497 VPVRRPGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAV 676
+P P + + + P+G+VG IT +NFP+ + A A+ CG+ + KP+E TPL A+
Sbjct: 453 IPADGP-YFVYTRHEPVGLVGAITPWNFPLNMASVKIAPALACGNVVILKPAEQTPLTAL 511
Query: 677 AVTKIVEKCAAEGTTLTWWPSHSTVPSGGKRV 772
+V++ + P + P+ G +
Sbjct: 512 YFCALVKEAGFPAGVVNVIPGYG--PTAGAAI 541
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/70 (18%), Positives = 35/70 (50%)
Frame = +3
Query: 306 LPAPARGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLSRTL 485
+ A RG+++ ++ + ++ L L +++ GK+ +++G++ + G + +
Sbjct: 389 MDASMRGKLLYKLAQLIDRDIAYLASLETIDSGKLFSDSVGDMQSSANCFRYYAGWADKV 448
Query: 486 PGTVFPSDVP 515
G P+D P
Sbjct: 449 TGKTIPADGP 458
>SB_36729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +2
Query: 80 STAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANGE 187
S A LIE+ KYS+L++LGLK +N GV+NG W GE
Sbjct: 33 SGALLIENEKYSWLRELGLKADNPGVYNGTWGGKGE 68
>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
Length = 266
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +2
Query: 545 LGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKI 691
+GVVG I A+NFP+ + W A+ G TV KP+E TPL A+ + ++
Sbjct: 188 VGVVGAIVAWNFPLLLACWKLGPALATGCTTVLKPAEDTPLTALKLAEL 236
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +2
Query: 527 IEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVEKCA 706
++ W P+GVVG I +NFP+ + W A+ G+ V KP+ T L A+ +I CA
Sbjct: 762 MQGWKPVGVVGGIVPWNFPLMLLCWKVCPALAMGNTVVLKPATYTRLSALLFAEI---CA 818
Query: 707 AEG 715
G
Sbjct: 819 EAG 821
>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 528
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2
Query: 503 VRRPGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAV 682
+R+ ++++ N L + +NFP+ + +A A+ G + KPSE TP A+A+
Sbjct: 126 LRKWFQLILQHQNELAELLTTEQWNFPLGMITRKAAAALAAGCTVIIKPSEETPFCALAL 185
Query: 683 TKIVEK 700
++ E+
Sbjct: 186 QQLAEE 191
>SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)
Length = 266
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 539 NPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIV 694
+P GV G+I+ +N P+ + + A A+ G V KPSE T + A + +++
Sbjct: 145 SPKGVAGLISPWNLPLYLLSFKIAPAVASGCTVVCKPSEMTSVTAWMMAELI 196
>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = +2
Query: 533 KWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVEK 700
K PLGV II+A+N+PV + A+ G+ V KPSE A V +V K
Sbjct: 69 KNEPLGVALIISAWNYPVQLIFLPLVGAIAGGNCAVLKPSEVASATAQLVADLVPK 124
>SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36)
Length = 542
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 587 AVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVEKCAAEGTTLTWWPS 739
A+ GW +A V T W P+ T V A+T+ TT+T WP+
Sbjct: 408 AITGWPNAFKPVETTITRW-PNGTVETVKTAITRWQNAFKPVETTITRWPN 457
>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 741 CDGHQVNVVPSAAHFSTILVTATATSGVVS 652
C+G +V + AA + I VTAT SG+++
Sbjct: 257 CEGFEVTTMDEAASQANIFVTATGCSGIIT 286
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Frame = -2
Query: 699 FSTILVTAT-----ATSGVVSDGFQTVASPQTIAIALFHPKTATGKLKAVMMPTTPSGFH 535
+ TI V AT + +G S ++T+A T +I+L +TA+ + + + TP
Sbjct: 628 YETIAVNATPIISPSPNGTTSSVYETIAVNATPSISLSTNETASSPYETIAVNATP---- 683
Query: 534 FSIRTCPGRLTGTQYRGVC-GTDPKLSHTREYTRS 433
+I P R T + Y + + P +S + T S
Sbjct: 684 -TIYPSPNRTTSSMYETIAVNSTPSISPSPNGTTS 717
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = -2
Query: 699 FSTILVTATAT-----SGVVSDGFQTVASPQTIAIALFHPKTATGKLKAVMMPTTPS 544
+ TI V AT T +G S ++T+A T +I+L +TA+ + + + +TPS
Sbjct: 743 YETIAVNATPTISPSPNGTTSSVYETIAVNATPSISLSTNETASSPYETIAVNSTPS 799
>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 523
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +2
Query: 548 GVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVEKCAAEGTTLT 727
G V ++ FNF A+ G + + G+ +WKP+ T L V ++ ++ +
Sbjct: 179 GFVAAVSPFNF-TAIGGNLAGTPALMGNVVLWKPASTAILSQYRVMEMFQEAGLPDGVIN 237
Query: 728 WWPS 739
+ PS
Sbjct: 238 FVPS 241
>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
Length = 281
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 50 YIRVPMARNASTAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANG 184
YIR P ARNA + E+ + D E N G + +WK NG
Sbjct: 21 YIRNPAARNACKQYGFEECIIEWTMD----EKNCGGLSAQWKDNG 61
>SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 71 RNASTAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANGEVI 193
R ST F ++ K F+ GL+ NV V G N EVI
Sbjct: 25 RFLSTLFPLQTKKKRFITHFGLRSRNVLVMTGNAHRNPEVI 65
>SB_11680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 666 SGVVSDGFQTVASPQTIAIALFHPKTATGKLKAVMMPTTPSG 541
SG T + PQ I++ P+T G L V +TPSG
Sbjct: 17 SGEKHKRMHTSSYPQGTRISILAPQTTNGTLLGVQRASTPSG 58
>SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)
Length = 440
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -1
Query: 553 NTKRVPFFDQDVSGTSDGNTVPGSVRD---RPKAKSHT*IYSITSPIASGRILPISNDTS 383
+T + FD+D+S SD + PG+ + + ++K T + A G + +S +
Sbjct: 289 HTSDLSSFDEDLSSESDNESTPGAKEESMPQDRSKPRTNKTNDIKKQAHGEMNKVSKHAT 348
Query: 382 FPSG*RFSLR 353
PSG SL+
Sbjct: 349 KPSGDSDSLK 358
>SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09)
Length = 1288
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 774 NTLLPPDGTVECDGHQVNVVPSAAHFSTIL 685
N L P D TV C H +V PS+AH T++
Sbjct: 657 NPLFPGD-TVSCFFHVTDVNPSSAHSGTVV 685
>SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 342
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +2
Query: 41 SLRYIRVPMAR-NASTAFLIEDPKYSFLKDLGLKENNVGVFNGKWKANGEVIKSY 202
S R +P+A A L+ D K F KD+ L+ + WK E I Y
Sbjct: 52 SSRKYAIPIAELTTEMAKLLRDVKVFFTKDINLERKGSPISPSTWKKANERILCY 106
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 561 MPTTPSGFHFSIRTCP-GRLTGTQYRGVCGTDPKLSHTREYTRSL 430
MPT P+G S +CP G CG DP +S T++ S+
Sbjct: 756 MPTGPTGSDLSCYSCPRGSKCDNVTVQRCGVDPLVSVTQDRCLSM 800
>SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)
Length = 592
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 629 DATVWKPSETTPLVAVAVTKIVEKCAAEGTTLTWWPSHS 745
D +PSE VAV +++E AA G LT W S+S
Sbjct: 78 DVLTSRPSEDE--VAVVANQLIEAVAAGGFRLTKWVSNS 114
>SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05)
Length = 659
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 629 DATVWKPSETTPLVAVAVTKIVEKCAAEGTTLTWWPSHS 745
D +PSE VAV +++E AA G LT W S+S
Sbjct: 391 DVLTSRPSEDE--VAVVANQLIEAVAAGGFRLTKWVSNS 427
>SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)
Length = 167
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 297 THATLPVPHWRTPHIGALPACTSAITLPFA 208
T+ TLP+ H T H + C+++ TLP +
Sbjct: 75 TYHTLPISHCATYHTLPISHCSTSYTLPIS 104
>SB_52175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 589 SHRKVEGCYDANNTKRVPFFDQDVSGTSDGNTVPGSV 479
SHRK++G Y + T+RV F+ + TV G V
Sbjct: 213 SHRKIKGAYFNHVTERVGFYHGQYRELHEFGTVRGVV 249
>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 589 SHRKVEGCYDANNTKRVPFFDQDVSGTSDGNTV 491
SHR V GC +AN R D G+ D N V
Sbjct: 475 SHRSVYGCPNANKATRRMRTDSGGKGSGDENNV 507
>SB_3940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 280 RKRGMRGRNCPRLQEARSLD 339
RKR ++G N P +QE RS D
Sbjct: 8 RKRTLKGENRPEIQETRSYD 27
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,799,035
Number of Sequences: 59808
Number of extensions: 569201
Number of successful extensions: 1550
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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