Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0091
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 50 2e-06
Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical pr... 39 0.003
AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein. 39 0.003
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 39 0.005
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 39 0.005
U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family ... 38 0.011
U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p... 38 0.011
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p... 38 0.011
U49829-5|AAK68351.1| 564|Caenorhabditis elegans Hypothetical pr... 35 0.056
AF025466-5|AAB71031.2| 428|Caenorhabditis elegans Nematode asta... 29 4.9
U41996-3|AAA83472.2| 362|Caenorhabditis elegans More of ms prot... 28 6.5
AF013952-1|AAC47749.1| 362|Caenorhabditis elegans mom-2 protein. 28 6.5
AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical ... 28 8.6
AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical ... 28 8.6
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 8.6
AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix metall... 28 8.6
>U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical
protein T19D2.1 protein.
Length = 872
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +2
Query: 92 LTRSQLGGPSGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHDGE 253
L R+ + +G+APV G+C+ RS I+ S FV+ HE+ H LG+ HDG+
Sbjct: 248 LHRNGVKTVAGYAPVKGMCSGVRSCTINEGLDFGSVFVVTHEMGHSLGMYHDGD 301
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 122 GFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHDGE 253
G A +G +C +S AI D GL++AF IAHEL H+ + HD E
Sbjct: 394 GLAELGTMCDMQKSCAIIEDNGLSAAFTIAHELGHVFSIPHDDE 437
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 122 GFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHDGE 253
G A +G +C +S AI D GL++AF IAHEL H+ + HD E
Sbjct: 394 GLAELGTMCDMQKSCAIIEDNGLSAAFTIAHELGHVFSIPHDDE 437
>Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical
protein F57B7.4 protein.
Length = 509
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 122 GFAPVGGVCTKTRSAAIDRD--EGLTSAFVIAHELAHLLGLTHDG 250
G A VG +C S+++ D GLTS ++AHE+ H LG HDG
Sbjct: 271 GMAYVGNICENGDSSSVVEDIGAGLTS-LIMAHEIGHSLGALHDG 314
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Frame = +3
Query: 462 QCRTEFGEGFSVCRSVRFGLRAQGCG---VPTALCLTCAGSKRAPPLEGTPCGQNQWCVD 632
QC+ FG F C + + C C P +GT CG N WC++
Sbjct: 397 QCQVAFGPTFIPCLHIGYFHEQSICERIWCSDGESDECQTLNYFPAFDGTECGYNMWCLE 456
>AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein.
Length = 509
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 122 GFAPVGGVCTKTRSAAIDRD--EGLTSAFVIAHELAHLLGLTHDG 250
G A VG +C S+++ D GLTS ++AHE+ H LG HDG
Sbjct: 271 GMAYVGNICENGDSSSVVEDIGAGLTS-LIMAHEIGHSLGALHDG 314
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Frame = +3
Query: 462 QCRTEFGEGFSVCRSVRFGLRAQGCG---VPTALCLTCAGSKRAPPLEGTPCGQNQWCVD 632
QC+ FG F C + + C C P +GT CG N WC++
Sbjct: 397 QCQVAFGPTFIPCLHIGYFHEQSICERIWCSDGESDECQTLNYFPAFDGTECGYNMWCLE 456
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 119 SGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHDG 250
+G APV +C + ++ L +FV+AHE+ H +G+ HDG
Sbjct: 357 AGVAPVARMCDPLFACSLVEGLHLGRSFVLAHEMGHNMGMVHDG 400
Score = 31.5 bits (68), Expect = 0.70
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +3
Query: 447 FTMDEQCRTEFGEGFSVCRSVRFGLRAQG-CGVPTALCLTCAGSKRAPPLEGTPCGQNQW 623
FT D+QC +G + V + G C + S P LEG+ CG N+W
Sbjct: 470 FTADQQCSYFWGRDYKV--EIPNGKAMDDICRILWCGNSGSTISTAHPALEGSWCGANKW 527
Query: 624 CVDRVLRXDAWATVKETKG*KTKHTPEWGEIWGGXEAHCKRRFXGVTG 767
C + W T T EW E WGG E C + V+G
Sbjct: 528 C--HKGQCTHW-TFGLT---PVPIDGEWSE-WGGAEKGCPIQQCAVSG 568
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 119 SGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHDG 250
+G APV +C + ++ L +FV+AHE+ H +G+ HDG
Sbjct: 357 AGVAPVARMCDPLFACSLVEGLHLGRSFVLAHEMGHNMGMVHDG 400
Score = 31.5 bits (68), Expect = 0.70
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +3
Query: 447 FTMDEQCRTEFGEGFSVCRSVRFGLRAQG-CGVPTALCLTCAGSKRAPPLEGTPCGQNQW 623
FT D+QC +G + V + G C + S P LEG+ CG N+W
Sbjct: 470 FTADQQCSYFWGRDYKV--EIPNGKAMDDICRILWCGNSGSTISTAHPALEGSWCGANKW 527
Query: 624 CVDRVLRXDAWATVKETKG*KTKHTPEWGEIWGGXEAHCKRRFXGVTG 767
C + W T T EW E WGG E C + V+G
Sbjct: 528 C--HKGQCTHW-TFGLT---PVPIDGEWSE-WGGAEKGCPIQQCAVSG 568
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 119 SGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHDG 250
+G APV +C + ++ L +FV+AHE+ H +G+ HDG
Sbjct: 357 AGVAPVARMCDPLFACSLVEGLHLGRSFVLAHEMGHNMGMVHDG 400
Score = 31.5 bits (68), Expect = 0.70
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +3
Query: 447 FTMDEQCRTEFGEGFSVCRSVRFGLRAQG-CGVPTALCLTCAGSKRAPPLEGTPCGQNQW 623
FT D+QC +G + V + G C + S P LEG+ CG N+W
Sbjct: 470 FTADQQCSYFWGRDYKV--EIPNGKAMDDICRILWCGNSGSTISTAHPALEGSWCGANKW 527
Query: 624 CVDRVLRXDAWATVKETKG*KTKHTPEWGEIWGGXEAHCKRRFXGVTG 767
C + W T T EW E WGG E C + V+G
Sbjct: 528 C--HKGQCTHW-TFGLT---PVPIDGEWSE-WGGAEKGCPIQQCAVSG 568
>U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family
protein 2, isoform c protein.
Length = 975
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 119 SGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHD 247
SG A + G+C + + TSAF+ HEL H +G+ HD
Sbjct: 330 SGIARLDGMCDPWNTCTLAEGLDFTSAFIGTHELGHSVGMRHD 372
>U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
protein 2, isoform a protein.
Length = 1020
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 119 SGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHD 247
SG A + G+C + + TSAF+ HEL H +G+ HD
Sbjct: 330 SGIARLDGMCDPWNTCTLAEGLDFTSAFIGTHELGHSVGMRHD 372
>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
protease protein.
Length = 1020
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 119 SGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAHLLGLTHD 247
SG A + G+C + + TSAF+ HEL H +G+ HD
Sbjct: 330 SGIARLDGMCDPWNTCTLAEGLDFTSAFIGTHELGHSVGMRHD 372
>U49829-5|AAK68351.1| 564|Caenorhabditis elegans Hypothetical
protein F27D9.7 protein.
Length = 564
Score = 35.1 bits (77), Expect = 0.056
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 77 DATIWLTRSQLGGPSGFAPVGGVCTKTRS--AAIDRDEGLTSAFVIAHELAHLLGLTH 244
D T+ L + GG A G+C+K + D + +A+V H+LAH++GLTH
Sbjct: 20 DVTVLLRHNYEGG---IAYSNGICSKNSLMISGFLPDATMNNAWVFMHQLAHVIGLTH 74
>AF025466-5|AAB71031.2| 428|Caenorhabditis elegans Nematode astacin
protease protein27 protein.
Length = 428
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 200 FVIAHELAHLLGLTHD 247
FV+AHE+AH LG H+
Sbjct: 146 FVVAHEIAHTLGFYHE 161
>U41996-3|AAA83472.2| 362|Caenorhabditis elegans More of ms protein
2 protein.
Length = 362
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 589 LSREHPVDKTNGAWIVFCEXMPG--PQLKRLKVEKPNILQ 702
LS+ +G+ + C+ +PG PQ KR+ E PNI++
Sbjct: 28 LSKTDTSSANSGSSPILCKNVPGLTPQQKRMCHENPNIIK 67
>AF013952-1|AAC47749.1| 362|Caenorhabditis elegans mom-2 protein.
Length = 362
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 589 LSREHPVDKTNGAWIVFCEXMPG--PQLKRLKVEKPNILQ 702
LS+ +G+ + C+ +PG PQ KR+ E PNI++
Sbjct: 28 LSKTDTSSANSGSSPILCKNVPGLTPQQKRMCHENPNIIK 67
>AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical
protein H19M22.3c protein.
Length = 453
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 200 FVIAHELAHLLGLTHDGEA 256
+V+AHE+ H LGL H +A
Sbjct: 240 YVLAHEIGHALGLDHSQKA 258
>AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical
protein H19M22.3a protein.
Length = 519
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 200 FVIAHELAHLLGLTHDGEA 256
+V+AHE+ H LGL H +A
Sbjct: 272 YVLAHEIGHALGLDHSQKA 290
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 27.9 bits (59), Expect = 8.6
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Frame = +3
Query: 324 CLVKL--FKGTISCEIKEVVVPP*AYTDEGV-ELGGAKELSNYVFTMDEQCRT-EFGEGF 491
C+ +L F+ I+ EI +++PP T EG+ N + +D+ E G
Sbjct: 1475 CIHRLIAFESNIASEIVNLIIPPVQCTPEGLFRKYQCDARLNQCWCVDKATGVEEIG--- 1531
Query: 492 SVCRSVRFGLRAQGCGVPTALCLTCAGSKRAP---PLEGTPCGQNQWC 626
R GL++ C +P + C GS R P +G+ C N C
Sbjct: 1532 --TRLFTIGLQSPDCNLPKSCPTQCIGS-RCPYGIRTDGSGCPANGVC 1576
>AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 200 FVIAHELAHLLGLTHDGEA 256
+V+AHE+ H LGL H +A
Sbjct: 181 YVLAHEIGHALGLDHSQKA 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,212,481
Number of Sequences: 27780
Number of extensions: 475334
Number of successful extensions: 1286
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -