Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0091
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.45 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 369 EVVVPP*AYTDEGVELGGAKELSNYVFTMDEQCRTEF 479
           E+++P  A T  G E+G     + Y + + + CRT F
Sbjct: 380 EMILPGVAVTYYGEEIGMVDNTTIYKYDVRDGCRTPF 416


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 114 GLQDSPP*VGSAPKRGQPPS 173
           G Q SP     AP+RG PP+
Sbjct: 22  GPQPSPHQSPQAPQRGSPPN 41



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 147 QTPPTGANPEGPPS 106
           Q PP G  P  PPS
Sbjct: 44  QGPPPGGPPGAPPS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,873
Number of Sequences: 438
Number of extensions: 5323
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)