Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0091
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47390.1 68414.m05246 F-box family protein contains F-box dom...    29   2.6  
At1g43950.1 68414.m05070 auxin-responsive factor, putative simil...    29   4.5  
At1g32910.1 68414.m04054 transferase family protein low similari...    28   6.0  
At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein si...    28   7.9  
At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein co...    28   7.9  

>At1g47390.1 68414.m05246 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 430 SSQIMSSQWMNSAGLNSEKVSQCVDP*GSVCVLKVVVCPPRYASR--VPVQSERRLSREH 603
           S  + S++WMN   +++  +   V P   +   K+VVC      +  + V  + +L  + 
Sbjct: 277 SGDVDSAEWMNFMEVSTLNLPVLVHPSYFIDDKKLVVCSCDQTGQAWIYVVGDNKLISKI 336

Query: 604 PVDKTNGAWIVFCEXMP 654
            +D   G W + C   P
Sbjct: 337 QIDSVVGPWPLHCSFFP 353


>At1g43950.1 68414.m05070 auxin-responsive factor, putative similar
           to auxin response factor 9 [Arabidopsis thaliana]
           GI:4580575; contains Pfam profile PF02362: B3 DNA
           binding domain; non-consensus TT donor splice site at
           exon 5
          Length = 222

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 23  NKWNYRHLMKLPEG-STGWDA 82
           N+W ++H  ++P G +TGW+A
Sbjct: 174 NQWRFKHSYRVPRGDTTGWNA 194


>At1g32910.1 68414.m04054 transferase family protein low similarity
           to anthranilate N-hydroxycinnamoyl/benzoyltransferase
           Dianthus caryophyllus GI:2239091, benzylalcohol
           acetyltransferase Clarkia breweri GI:6166336; contains
           Pfam profile PF02458 transferase family
          Length = 464

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 604 PVDKTNGAWIVFCEXMPGPQLKRLKVEKPNILQ 702
           PVD  NG W+V+     G QLK ++ E  ++L+
Sbjct: 420 PVDDGNGDWVVYLHLTKG-QLKFIEEEASHVLK 451


>At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein
           similar to EXO70 protein (GI:2352998) [Mus musculus];
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 658

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
 Frame = +2

Query: 23  NKWNYRHLMKLPEGSTGWDATIWLTRSQL--GGPSGFAPVGGVCTKTRS-AAIDRDEGLT 193
           +KWN +H  K  + +T ++   WL          SG  P  G  + +++    +R +G  
Sbjct: 519 DKWNRKHTWKFQQQATEYERATWLPVLSFLKDDGSGSGPGSGSGSGSKNLRPRERFQGFN 578

Query: 194 SAFVIAHELAHLLGLTHDGEAIVSLKRFEAL*WHRQ-YWLPYTTLPGQVVQR 346
           +AF   ++     G     E +    R +A  W  Q YW  Y+     V +R
Sbjct: 579 TAFEEVYKAQ--TGWLISDEGLREDVRTKASMWVIQAYWTFYSRHKNSVSER 628


>At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein
           contains similarity to endo-b-N-acetylglucosaminidase
           GI:13774138 from [Mucor hiemalis]
          Length = 701

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/51 (21%), Positives = 23/51 (45%)
 Frame = +1

Query: 244 RWRSNCQSEALRGSVMAPTVLATLHNFAWSSCSKEQFHAKSKKWWCLHERT 396
           +W  N   + L+ + ++  + A    + + +     FH    KWW L E++
Sbjct: 285 QWTVNAALDLLKRNNVSAAIFAP--GWVYETAQPPNFHTAQNKWWSLVEKS 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,309,328
Number of Sequences: 28952
Number of extensions: 448265
Number of successful extensions: 1196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)