Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0090
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.1
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1... 27 1.5
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 2.0
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 2.6
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 4.6
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 26 4.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.6
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 6.1
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 25 6.1
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 6.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 6.1
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 25 8.0
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom... 25 8.0
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 395 RLWRXRRRASAPDAESEEEQRSGSLP-RLPSVTGTTATPSGPVKSRP 532
+++ RR++A ES E+R SLP R PS GT T P +S P
Sbjct: 191 KIYPSPRRSTAATLESAYEERPPSLPRRKPSRPGTAIT-LPPYESDP 236
>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = -1
Query: 269 PGAPIE---TTTPRKPFTITSHTTPT 201
P P+ T TP++ FT T HT PT
Sbjct: 51 PNTPVPCKITVTPQRTFTFTIHTPPT 76
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 282 AALWAVRDVKLADHPQPWI 338
A LWA D K + HP WI
Sbjct: 268 AELWAEEDAKTSQHPAIWI 286
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.6
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +2
Query: 284 GTLGGAGCEARRSPAALDLAXQKSHSRSCGAIS--GSEDRLWRXRRRASAPDAESEEEQR 457
G+ G A +S A + + G+ GS + + + AS + +
Sbjct: 109 GSTGSANSTGDKSKNTASSATGAATTNPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAAS 168
Query: 458 SGSLPRLPSVTGTT--ATPSGPVKSRPIQSTG 547
+GSL P+ TGTT A P+ + P +G
Sbjct: 169 TGSLFGKPAATGTTSNAPPASSTSTTPATGSG 200
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 39 PPLFGKVMRHIGGRLVALMHEVSGGASPSTDDD 137
PPLF +M+H+ RL +L + V S S D D
Sbjct: 511 PPLFASLMQHLSCRLNSLNNLVRYIRSMSLDVD 543
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 69 IGGRLVALMHEVSGGASPSTDDDSASE 149
IGG L +M+ V +SPS+ S SE
Sbjct: 66 IGGSLAKVMYYVCESSSPSSSSSSISE 92
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 342 ARSKAAGDLRASHPAPP 292
+RSKA+G+ S+PAPP
Sbjct: 527 SRSKASGEAPYSYPAPP 543
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 422 SAPDAESEEEQRSGSLPRLPSVTGTTATPSGPVKSRPIQS 541
S +AES++ +GS R PSVT +P+ V +RP+ S
Sbjct: 385 SIQEAESQKPVLTGSSMRRPSVT----SPTFEVAARPLTS 420
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 309 SHPAPPRVPRESAARSAD*NYHATKTVHNH*PH 211
+H P P S A NY+A++ NH PH
Sbjct: 279 THAQPTHNPTSSYGNGASTNYNASRPPSNH-PH 310
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 175 DLLRRNAPGSDALSSSVLGDAPPDTSCI 92
D L P +A +S G APPD SC+
Sbjct: 154 DFLPPPYPNVEAARASNNGAAPPDLSCV 181
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/57 (17%), Positives = 25/57 (43%)
Frame = -1
Query: 284 RASRPPGAPIETTTPRKPFTITSHTTPTXCRFQNVVRFTPA*RSRFRRAVVICARRC 114
+ S PP + +P + ++++TTP +++ A + ++ + R C
Sbjct: 236 KTSMPPFGSAGSPSPNRSLNVSNNTTPPLSTVNKIIKKPKATTGKVKKRLPQAKRAC 292
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 287 TLGGAGCEARRSPAALDLAXQKSHSRSCGAISGSEDRLWR 406
T G A + + ALD+A + HS I+ D LW+
Sbjct: 1099 TTGKANEDLGKYAKALDVAIMQLHSMKMNEINRIVDELWK 1138
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 166 RRNAPGSDALSSSVLGDAPPD 104
R N SDA SSS+L ++PP+
Sbjct: 149 RDNIETSDAYSSSILENSPPN 169
>SPAC10F6.16 |mug134||endosulphine family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -3
Query: 561 RCNGSPVLCIGRDLTGPDGVAVVPVTDGNRGNDP 460
+ + S + CIG+++ PD + V+ G+ +P
Sbjct: 74 KASDSGITCIGKEIPSPDTIPHRVVSAGSPNKEP 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,782
Number of Sequences: 5004
Number of extensions: 44170
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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