Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0090
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)                 33   0.22 
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_43824| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               29   3.6  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               29   3.6  
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        29   3.6  
SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)                    28   6.3  
SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)                      28   6.3  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         27   8.4  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               27   8.4  

>SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)
          Length = 183

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
 Frame = +2

Query: 305 CEARRSPAALDLAXQKS---------HSRSCGAISGSEDRLWRXRRRASAPDAESEEEQR 457
           C +R SPA  + + + S          S S    S S DRL    RR+++ D      +R
Sbjct: 91  CSSRVSPAPSNTSRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMRDRRSASRDRLQMRNRR 150

Query: 458 SGSLPRLPSVTGTTATPSGPVKSRP 532
           S S  R+PS  G   +PS P   RP
Sbjct: 151 SASRDRIPSSGGRRRSPS-PSGPRP 174


>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 251 TTTPRKPFTITSHTTPTXCRFQNVVRFTP 165
           TTTP +P T+T  TTPT  R   +   TP
Sbjct: 527 TTTPTRPVTLTGSTTPTGNRLITLSGVTP 555


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
 Frame = +2

Query: 305 CEARRSPAALDLAXQKS---------HSRSCGAISGSEDRLWRXRRRASAPDAESEEEQR 457
           C +R SPA  + + + S          S S    S S DRL    RR+++ D      +R
Sbjct: 351 CSSRVSPAPSNTSRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMRDRRSASRDRLQMRNRR 410

Query: 458 SGSLPRLPSVTGTTATPS 511
           S S  R+PS  G   +PS
Sbjct: 411 SASRDRIPSSGGRRRSPS 428


>SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +2

Query: 404 RXRRRASAPDAESEEEQRSGSLPRLPSVTGTTATPSGPVK 523
           + RRR +APD ESEEE RS S         +   PS PV+
Sbjct: 275 KQRRRKNAPDEESEEETRSQSSSSENVNQVSYQLPSDPVQ 314


>SB_43824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 380 SGSEDRLWRXRRRASAPDAESEEEQRSGSLPRLPSVTGTTATPS 511
           S S DRL    RR+++ D      +RS S  R+PS  G   +PS
Sbjct: 34  SSSRDRLEMRDRRSASRDRLQMRNRRSASRDRIPSSGGRRRSPS 77


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 23/91 (25%), Positives = 32/91 (35%)
 Frame = +2

Query: 272  ADSRGTLGGAGCEARRSPAALDLAXQKSHSRSCGAISGSEDRLWRXRRRASAPDAESEEE 451
            +   G+L     E+   P    LA   + S      S   + L       +AP      +
Sbjct: 2726 SSKEGSLNNLNDESPTPPTPSSLASDSTESPKTSIASPVPESLTPTPDTLTAPTNNGIAK 2785

Query: 452  QRSGSLPRLPSVTGTTATPSGPVKSRPIQST 544
            QR  S   LPS   T+ T S    S+   ST
Sbjct: 2786 QRDNSNDSLPSAASTSTTSSAESLSKTTSST 2816


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +2

Query: 305  CEARRSPAALDLAXQKSHSRSCGAISGSEDRLWRXRRRASAPDAESEEEQRSGSLPR 475
            CE  RSP A  L     H     + S     L R   R +  D++S+E     +LPR
Sbjct: 1450 CEPPRSPRAFTLPITPVHLEPSPSTSRQRTPLLRQADRTA--DSDSDESDEDNTLPR 1504


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -1

Query: 302 PHRPECRASRPPGAPIETTTPR--KPFTITSHTT 207
           PH  + R ++PP     TT P   KP T   HTT
Sbjct: 151 PHTTKPRTTKPPTTKPHTTKPHTTKPHTTKPHTT 184


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 293 PECRASRPPGAPIETTTPRKPFTITSHTTP 204
           PE   +R PGAPI T  P     I   TTP
Sbjct: 488 PEGALNRAPGAPITTDPPNPDRAIPGVTTP 517


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 293  GGAGCEARRSPAALDLAXQKSHSRSCGAISGSEDRLWRXRRRASAPDAESEEEQRSGS 466
            GG+G        A  +  ++S  RSC    G +DR +  R R    D + + ++  GS
Sbjct: 1274 GGSGEPGHDPRRAGKIYGERSKERSCERKDGHDDRRYYERERDRDRDRDRDRDRYHGS 1331


>SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)
          Length = 562

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 573 AARCRCNGSPVLCIGRDLTGPDGVAVVPVTDGN 475
           A RC+ N S V+C+G D  G  GV V   T  N
Sbjct: 295 AFRCQGNESSVICVG-DALGVGGVGVEENTTAN 326


>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 420

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 285 ALWAVRDVKLADHPQPWIWLXRSRTLAVVEL 377
           +++AV D+   D PQPW W         VEL
Sbjct: 155 SIFAVYDIYKNDSPQPWPWWAFQTLFRCVEL 185


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 551 EARCSVSGGT*PAPTESRSYPSQTVTAVMIPNAVPPPTPHQEP 423
           E     +G     P E  S P Q     ++PN VPP  P Q P
Sbjct: 219 EIPAETAGQPTEGPVELGSSP-QATRPYVVPNIVPPQEPEQPP 260


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 311 LHIPHRPECRASRP--PGAPIETTTPRKPFTITSHTTPT 201
           +H+ H   C  S P  P  P   +TP  P T ++ +TP+
Sbjct: 627 VHLAHLCTCTLSTPSTPSTPSTRSTPSTPSTPSTPSTPS 665


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
 Frame = -1

Query: 455 AVPPPTPHQEPTLFSVHAKVXXXXXXXXHNCESATSXQPDPR--LRVICELHIPHRPECR 282
           +VPPP P   P L S    +          C       P P+     +     P  P C 
Sbjct: 692 SVPPPPPPPPPPLLSGTLPMPPPPPPPPPGCAGLPPPPPSPQPGCAGLPPPPPPPPPGCA 751

Query: 281 ASRPPGAPIETTTPRKP 231
              PP  PI+   P KP
Sbjct: 752 GLPPPPPPID--VPMKP 766


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 530 GGT*PAPTESRSYPSQTVTAVMIPNAVPPPTP 435
           GG  P P       S +   + +P++VPPP P
Sbjct: 27  GGILPTPALIPQLMSSSGNTIAVPSSVPPPPP 58


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 151 GSDALSSSVLGDAPPDTSCINATSLPPICLMTFPNKGGEPSPARPKVA 8
           GS + +SSV+  A P TS + AT +P +  +   +    PS A   +A
Sbjct: 212 GSTSAASSVVVAATPSTSPVPATFVPSLPTVASASTLSAPSVAASSIA 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,914,230
Number of Sequences: 59808
Number of extensions: 424069
Number of successful extensions: 1755
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)