Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0089
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631 33 0.28
11_06_0747 - 26867114-26867225,26868443-26868531,26869342-268693... 28 6.0
06_03_0262 + 18905352-18905481,18905570-18906003,18906082-189063... 28 6.0
04_03_0421 - 15725045-15725193,15725528-15725599,15725709-157257... 28 6.0
04_03_0412 - 15595781-15596081,15596161-15596331,15596414-155972... 28 6.0
10_08_0786 - 20540061-20542106 28 7.9
06_03_0771 + 24473176-24473203,24473292-24474025,24474104-244745... 28 7.9
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 28 7.9
06_01_1148 + 9629630-9629759,9629848-9630581,9630660-9631121,963... 28 7.9
05_07_0218 + 28470325-28470454,28470543-28471276,28471355-284718... 28 7.9
05_05_0143 + 22675463-22675592,22676227-22676414,22676492-226766... 28 7.9
02_05_0268 - 27302734-27303034,27303114-27303284,27303367-273041... 28 7.9
01_02_0132 + 11444480-11444609,11444698-11445131,11445210-114454... 28 7.9
>11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631
Length = 417
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -2
Query: 673 PFTPVQSLPKLSFSNRDARSISRGTRVLGGFSHLHHKGFTDDMAVNEEVGIDLV 512
P T + L +F +R AR+ +R VLG H HH G DM G +LV
Sbjct: 81 PDTVREILAGAAFRDRPARAAARELIVLGLVHHDHHGGVISDMGDMVREGYELV 134
>11_06_0747 -
26867114-26867225,26868443-26868531,26869342-26869380,
26869819-26870077,26870157-26870327,26870410-26870451,
26870896-26871242,26871324-26871785,26871864-26872597,
26872686-26872815
Length = 794
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEP 23
T+G KT + P ++ ++T RPSRP L P
Sbjct: 511 TLGDACKTFIQWPKEDIVVKMTPRPSRPTELTP 543
>06_03_0262 +
18905352-18905481,18905570-18906003,18906082-18906303,
18906381-18906842,18906935-18907755,18907838-18908008,
18908088-18908347,18908453-18908508,18908786-18908824,
18909711-18909764
Length = 882
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEP 23
T+G KT + P ++ ++T RPSRP L P
Sbjct: 481 TLGDACKTFIQWPKEDIVVKMTPRPSRPTELTP 513
>04_03_0421 -
15725045-15725193,15725528-15725599,15725709-15725784,
15728607-15728679,15728919-15728983,15729423-15729681,
15729761-15729931,15730014-15730846,15731097-15731390,
15731469-15731939
Length = 820
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEP 23
T+G KT + P ++ ++T RPSRP L P
Sbjct: 324 TLGDACKTFIQWPKEDIVVKMTPRPSRPTELTP 356
>04_03_0412 -
15595781-15596081,15596161-15596331,15596414-15597246,
15597369-15597788,15597867-15598337
Length = 731
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEP 23
T+G KT + P ++ ++T RPSRP L P
Sbjct: 366 TLGDACKTFIQWPKEDIVVKMTPRPSRPTELTP 398
>10_08_0786 - 20540061-20542106
Length = 681
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 257 VVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKVFRVLYYAK 382
V K +EM KMG +PR E H +EE VK ++ Y+++
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYH----DLEEEVKEQQLSYHSE 615
>06_03_0771 +
24473176-24473203,24473292-24474025,24474104-24474565,
24474647-24475479,24475562-24475732,24475812-24476112
Length = 842
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEP 23
T+G KT + P ++ ++T RPSRP+ L P
Sbjct: 477 TLGDARKTFIQWPKEDIVVKMTPRPSRPMELTP 509
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEP 23
T+G KT + P ++ ++T RPSRP+ L P
Sbjct: 304 TLGDARKTFIQWPKEDIVVKMTPRPSRPMELTP 336
>06_01_1148 +
9629630-9629759,9629848-9630581,9630660-9631121,
9631203-9632035,9632118-9632288,9632368-9632668
Length = 876
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEPSCLKNS 5
T+G KT + P ++ ++T RPSRP L P K S
Sbjct: 511 TLGDARKTFIQWPKEDIVVKMTPRPSRPTELTPPKCKLS 549
>05_07_0218 +
28470325-28470454,28470543-28471276,28471355-28471816,
28471898-28472730,28472813-28472983,28473063-28473180
Length = 815
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEPSCLKNS 5
T+G KT + P ++ ++T RPSRP L P K S
Sbjct: 511 TLGDARKTFIQWPKEDIVVKMTPRPSRPTELTPPKCKLS 549
>05_05_0143 +
22675463-22675592,22676227-22676414,22676492-22676649,
22676656-22676953,22677035-22677867,22677950-22678120,
22678242-22678458,22678911-22678949,22679167-22679226
Length = 697
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEP 23
T+G KT + P +I ++T RPSRP L P
Sbjct: 327 TLGDARKTFIQWPKEDIIVKMTPRPSRPTELTP 359
>02_05_0268 -
27302734-27303034,27303114-27303284,27303367-27304199,
27304281-27304742,27304821-27305554,27305643-27305772
Length = 876
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEPSCLKNS 5
T+G KT + P ++ ++T RPSRP L P K S
Sbjct: 511 TLGDARKTFIQWPKEDIVVKMTPRPSRPTELTPPKCKLS 549
>01_02_0132 +
11444480-11444609,11444698-11445131,11445210-11445431,
11445510-11445971,11446053-11446885,11446968-11447138,
11447218-11447518
Length = 850
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 115 TIGSLVKTIVP*PP--LIAELTXRPSRPVVLEPSCLKNS 5
T+G KT + P ++ ++T RPSRP L P K S
Sbjct: 485 TLGDARKTFIQWPKEDIVVKMTPRPSRPTELTPPKCKLS 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,090
Number of Sequences: 37544
Number of extensions: 348049
Number of successful extensions: 960
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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