Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0089
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U21308-14|ABB88222.1|  429|Caenorhabditis elegans Tryptophan hyd...    31   0.76 
U21308-13|ABB88221.1|  532|Caenorhabditis elegans Tryptophan hyd...    31   0.76 
AF135186-1|AAD30115.1|  532|Caenorhabditis elegans tryptophan hy...    31   0.76 
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z81486-1|CAB03983.1|  139|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +3

Query: 42  LLGRXVSSAISGGYGT------MVFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKE 203
           ++ + V S I+  YGT       +F K+  V     M+    + ++ HI QP    ++  
Sbjct: 45  VVAQTVISLIALIYGTSFLANPFLFIKKDQVTPRPIMRRSTQLSIIHHIRQPCQ-SNVPR 103

Query: 204 IAKEYNIEKSCDKYMNVMSLSSSWRCIR 287
           I    N+E +      + S +S W C+R
Sbjct: 104 ICDAPNLETTATSTTKLFSWNSQWTCLR 131


>U21308-14|ABB88222.1|  429|Caenorhabditis elegans Tryptophan
           hydroxylase protein1, isoform b protein.
          Length = 429

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/77 (27%), Positives = 41/77 (53%)
 Frame = +2

Query: 134 EGALHHEAA*PYPPADHV*GHQGDRQGV*HREKLRQVHECHVVKQFMEMYKMGMLPRGET 313
           E AL+++   P P  ++    +    G+ +R KLR++H+ H  KQF++ ++  +L R   
Sbjct: 127 ELALNYKHGEPIPRTEYT-SSERKTWGIIYR-KLRELHKKHACKQFLDNFE--LLERHCG 182

Query: 314 FVHTNELQMEEAVKVFR 364
           +   N  Q+E+  K  +
Sbjct: 183 YSENNIPQLEDICKFLK 199


>U21308-13|ABB88221.1|  532|Caenorhabditis elegans Tryptophan
           hydroxylase protein1, isoform a protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/77 (27%), Positives = 41/77 (53%)
 Frame = +2

Query: 134 EGALHHEAA*PYPPADHV*GHQGDRQGV*HREKLRQVHECHVVKQFMEMYKMGMLPRGET 313
           E AL+++   P P  ++    +    G+ +R KLR++H+ H  KQF++ ++  +L R   
Sbjct: 230 ELALNYKHGEPIPRTEYT-SSERKTWGIIYR-KLRELHKKHACKQFLDNFE--LLERHCG 285

Query: 314 FVHTNELQMEEAVKVFR 364
           +   N  Q+E+  K  +
Sbjct: 286 YSENNIPQLEDICKFLK 302


>AF135186-1|AAD30115.1|  532|Caenorhabditis elegans tryptophan
           hydroxylase protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/77 (27%), Positives = 41/77 (53%)
 Frame = +2

Query: 134 EGALHHEAA*PYPPADHV*GHQGDRQGV*HREKLRQVHECHVVKQFMEMYKMGMLPRGET 313
           E AL+++   P P  ++    +    G+ +R KLR++H+ H  KQF++ ++  +L R   
Sbjct: 230 ELALNYKHGEPIPRTEYT-SSERKTWGIIYR-KLRELHKKHACKQFLDNFE--LLERHCG 285

Query: 314 FVHTNELQMEEAVKVFR 364
           +   N  Q+E+  K  +
Sbjct: 286 YSENNIPQLEDICKFLK 302


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 409 RSPHENIEVLSVVEDSEDFD 350
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/79 (27%), Positives = 32/79 (40%)
 Frame = +2

Query: 176 ADHV*GHQGDRQGV*HREKLRQVHECHVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVK 355
           AD       DR+   HRE  R++HE      F + +    LP   TF  + E     +  
Sbjct: 57  ADDEQRQSADRRAQDHRESFRRLHE--EASSFADFFTNARLPAMRTF--SPEAARSSSNS 112

Query: 356 VFRVLYYAKDFDVFMRTAC 412
             R     +DF++ M  AC
Sbjct: 113 SDRNPRMDQDFELAMELAC 131


>Z81486-1|CAB03983.1|  139|Caenorhabditis elegans Hypothetical
           protein C53A5.1 protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 407 ACWMRERINGGMFVYAFTAACFHRTDXQGSLPARPYEIYPY 529
           A W  E + G   V A   A    TD    +PARP+    Y
Sbjct: 10  AKWTAETVKGAAVVVASPNAPIPATDLHPRMPARPWTAQEY 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,574
Number of Sequences: 27780
Number of extensions: 270960
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)