Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0089
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30560.1 68416.m03867 hypothetical protein                          30   1.6  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   2.8  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   2.8  
At5g53840.1 68418.m06690 F-box family protein (FBL13) contains F...    29   3.7  
At5g42080.2 68418.m05123 GTP-binding protein / phragmoplastin, p...    29   3.7  
At5g42080.1 68418.m05122 GTP-binding protein / phragmoplastin, p...    29   3.7  

>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 227 EKLRQVHECHVVKQFMEMYKMGMLPRGE 310
           EKLR++HECHV   ++ +    + P+GE
Sbjct: 334 EKLRRIHECHV--SYLSLQYPLLFPKGE 359


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 308 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 433
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 308 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 433
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At5g53840.1 68418.m06690 F-box family protein (FBL13) contains
           F-box domain PF:00646
          Length = 444

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 658 QSLPKLSFSNRDARSISRGTRVLGGFSHLHHKGFTDDMAV 539
           Q +P L F +R+ RS S      G F +LH   +   + V
Sbjct: 55  QLVPVLDFDSRELRSFSEFVSFAGSFFYLHKDSYIQKLRV 94


>At5g42080.2 68418.m05123 GTP-binding protein / phragmoplastin,
           putative strong similarity to GTP-binding protein
           [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
           [Glycine max] GI:1218004; contains Pfam profiles
           PF01031: Dynamin central region, PF00350: Dynamin family
          Length = 429

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 619 RSISRGTRVLGGFSHLHHKGFTDDMAVNEEV 527
           + I  GTR    F HL  K FTD  AV +E+
Sbjct: 77  QKIDDGTREYAEFLHLPRKKFTDFAAVRKEI 107


>At5g42080.1 68418.m05122 GTP-binding protein / phragmoplastin,
           putative strong similarity to GTP-binding protein
           [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
           [Glycine max] GI:1218004; contains Pfam profiles
           PF01031: Dynamin central region, PF00350: Dynamin family
          Length = 610

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 619 RSISRGTRVLGGFSHLHHKGFTDDMAVNEEV 527
           + I  GTR    F HL  K FTD  AV +E+
Sbjct: 77  QKIDDGTREYAEFLHLPRKKFTDFAAVRKEI 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,197
Number of Sequences: 28952
Number of extensions: 265089
Number of successful extensions: 746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)