Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0088
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 122 3e-29
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 103 1e-23
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 72 5e-14
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 1e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 62 4e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 60 2e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 1e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 1e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 57 1e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 52 5e-08
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 48 7e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 7e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 48 7e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 46 5e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 44 1e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 42 4e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 2e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 38 7e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.035
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 30 0.19
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.43
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.00
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 1.3
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 26 4.0
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 4.0
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 25 5.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 5.3
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 25 5.3
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.3
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 9.3
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 122 bits (295), Expect = 3e-29
Identities = 63/106 (59%), Positives = 79/106 (74%)
Frame = +1
Query: 112 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQ 291
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIM RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 292 SGTGKTATFSISILQTNRYXIS*MSSFDPGSHKXXWAQQIQKVVIA 429
SGTGKTATFSIS+LQ + + + AQQIQKVV+A
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTREL-AQQIQKVVVA 109
Score = 48.0 bits (109), Expect = 9e-07
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3
Query: 444 LNAKCHACIGGTNVREDIRQLEVGVHVVV 530
+N +CHACIGGT VR+D+ L+ GVHVVV
Sbjct: 114 MNVECHACIGGTLVRDDMAALQAGVHVVV 142
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 103 bits (248), Expect = 1e-23
Identities = 60/107 (56%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Frame = +1
Query: 112 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQA 288
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ KGRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 289 QSGTGKTATFSISILQTNRYXIS*MSSFDPGSHKXXWAQQIQKVVIA 429
QSGTGKTATFSI ILQ+ + + S A QIQ VV+A
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALIL-SPTRELAVQIQNVVLA 111
Score = 48.0 bits (109), Expect = 9e-07
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVV 527
H+N +CHACIGGT+V DI++L+ G HVV
Sbjct: 115 HMNVQCHACIGGTSVGNDIKKLDYGQHVV 143
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 72.1 bits (169), Expect = 5e-14
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Frame = +1
Query: 64 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 231
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 232 IQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
IQ+ +I A GRD++A+A++GTGKTA F I L+
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLE 104
Score = 32.7 bits (71), Expect = 0.035
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVVV 530
H+N K GGT +R+DI +L VH+VV
Sbjct: 138 HMNVKVMVTTGGTTLRDDIIRLNDTVHIVV 167
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 1e-12
Identities = 30/63 (47%), Positives = 51/63 (80%), Gaps = 2/63 (3%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA--IMXASKGRDVIAQAQSGTGKTATFSI 324
V++F+++ LK ELL+GIY+ F+KPS IQ++A ++ ++ R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 325 SIL 333
++L
Sbjct: 173 TML 175
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 62.5 bits (145), Expect = 4e-11
Identities = 28/61 (45%), Positives = 42/61 (68%)
Frame = +1
Query: 154 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
+TF D NL L R I+ FEKP+++Q I A +G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 334 Q 336
+
Sbjct: 74 E 74
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 60.1 bits (139), Expect = 2e-10
Identities = 32/59 (54%), Positives = 37/59 (62%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F D LK ELLR I GFE PS +QQ I + G DV+ QA+SG GKTA F +S LQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQ 111
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 57.6 bits (133), Expect = 1e-09
Identities = 33/107 (30%), Positives = 55/107 (51%)
Frame = +1
Query: 16 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 195
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 196 GIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
GF+ P+ IQQ AI RDVI AQ+G+GKTA F++ ++Q
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 57.2 bits (132), Expect = 1e-09
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
+F MNL +L+G+ GFE P+ IQ + I A G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 337 TNRY 348
Y
Sbjct: 320 RLLY 323
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 57.2 bits (132), Expect = 1e-09
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F M L + LLR I+ GF+ P+ IQ++ I +GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 52.0 bits (119), Expect = 5e-08
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
+E F D+ L E + + I GFE + IQ+R+I GRDV+ A++G+GKT F I
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 331 LQ 336
++
Sbjct: 148 IE 149
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 48.4 bits (110), Expect = 7e-07
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + V ++ L + + I + G+EKP++IQ +AI + GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 316 FSISILQ 336
F + + +
Sbjct: 472 FLLPMFR 478
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.4 bits (110), Expect = 7e-07
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
V + +L E+L + GF KP IQ I AS G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 331 LQ 336
L+
Sbjct: 181 LE 182
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 48.4 bits (110), Expect = 7e-07
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
V F L LL+ I G+ +P+ +Q+ +I + GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 331 L 333
L
Sbjct: 228 L 228
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 45.6 bits (103), Expect = 5e-06
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
V TF++ +L+ + GFE P+ IQQ+A A GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCL 178
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/66 (30%), Positives = 40/66 (60%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + +++ L E+L+ + +++PS+IQ+ AI + +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 316 FSISIL 333
F I ++
Sbjct: 303 FIIPLI 308
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 42.3 bits (95), Expect = 4e-05
Identities = 19/61 (31%), Positives = 37/61 (60%)
Frame = +1
Query: 154 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
++F D+ + L+ + A +P+ IQ+ I +GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 334 Q 336
+
Sbjct: 67 E 67
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
FD++++ +L G+ Y ++P+ IQ GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATF 318
+F +N+ + L + A GF+K + +Q AI K +D++ +A +G+GKT +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAY 55
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 38.3 bits (85), Expect = 7e-04
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +1
Query: 145 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
+ V+ F ++ L + + F + IQ++ I A KGRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 325 SILQ 336
+++
Sbjct: 96 PLIE 99
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 32.7 bits (71), Expect = 0.035
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 211 GFEKPSAIQQRAIMXASKGRD-VIAQAQSGTGKTATF 318
GFEK + +QQR + + + QA++GTGKT F
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAF 93
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 30.3 bits (65), Expect = 0.19
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 226 SAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
+ IQ+ AI RD++A A +G+GKT + ILQ
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQ 106
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.1 bits (62), Expect = 0.43
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 175 LKEELLRGIY-AYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQT 339
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ+
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQS 350
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.00
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 124 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 216
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 223 PSAIQQRAI--MXASKGRDVIAQAQSGTGKTATFSISILQ 336
P+AIQ + + + +D +AQ+G+GKT + + I+Q
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQ 201
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 101 DLREWTLGHLTPT 139
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 199 IYAYGFEKPSAIQQRAIMXASKGRDV-IAQAQSGTGKTATF 318
+Y Y F KP+ I R I SK D A + + K + F
Sbjct: 1 MYKYCFRKPACISYRGIRFMSKASDTDPTLANASSAKRSAF 41
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 121 QGPFPEVHRNYLDPSMAHFWNPLANL 44
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 418 VVIAPWXFT*MLNAMLALVAPMSVKIFXNWKLVFM 522
VVI+ F+ L AML L + ++ W +VFM
Sbjct: 111 VVISFMLFSGGLQAMLILTIKLGIRRHVEWPVVFM 145
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 5.3
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 130 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIMXASK 264
DTDWD +V + D++L+ RGI A G + + Q+ A + +SK
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 127 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRD 273
LDT+W V + NL+ + + I + F PS I + M + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 9.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = +1
Query: 385 HKXXWAQQIQKVVIAPW 435
H+ WAQ +++ PW
Sbjct: 394 HQTYWAQTFVSIIVTPW 410
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 259 SKGRDVIAQAQSGTGKTATFSISILQTNRYXIS 357
SKG+++++++ T ++ S+SI NR+ S
Sbjct: 9 SKGKEILSKSNLKTHTSSNASLSIDDLNRFGFS 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,975
Number of Sequences: 5004
Number of extensions: 45023
Number of successful extensions: 160
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -