Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0088
(530 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 2e-21
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 7e-15
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 68 4e-12
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 68 4e-12
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 60 8e-10
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 60 1e-09
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 57 8e-09
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 54 5e-08
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 5e-07
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 51 7e-07
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 9e-07
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 48 4e-06
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 48 5e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 47 1e-05
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 46 3e-05
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 46 3e-05
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 6e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 41 7e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 38 0.005
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 34 0.063
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 34 0.083
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 30 1.0
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 3.1
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 5.4
SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 99.1 bits (236), Expect = 2e-21
Identities = 67/130 (51%), Positives = 76/130 (58%), Gaps = 27/130 (20%)
Frame = +1
Query: 121 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASK------------ 264
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI +
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQL 111
Query: 265 ----------GRDVIAQAQSGTGKTATFSISILQTNRYXIS*MSSFD-----PGSHKXXW 399
RDVIAQAQSGTGKTATF+ISILQ + D +
Sbjct: 112 NLTKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTREL 171
Query: 400 AQQIQKVVIA 429
AQQIQKVV+A
Sbjct: 172 AQQIQKVVLA 181
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVVV 530
+++ KCHACIGGTNVRED +LE GVHVVV
Sbjct: 185 YMHVKCHACIGGTNVREDRMKLEEGVHVVV 214
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 77.4 bits (182), Expect = 7e-15
Identities = 46/73 (63%), Positives = 50/73 (68%)
Frame = +1
Query: 211 GFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQTNRYXIS*MSSFDPGSHK 390
GFEKPSAIQQRAI KGRDVIAQAQSGTGKTATFSIS+LQ + + S
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQAL-VLSPT 74
Query: 391 XXWAQQIQKVVIA 429
A QIQKVV+A
Sbjct: 75 RELANQIQKVVLA 87
Score = 48.0 bits (109), Expect = 5e-06
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVV 527
+++ +CHACIGGTN+ EDIR+L+ G H+V
Sbjct: 91 YMSVQCHACIGGTNIGEDIRKLDYGQHIV 119
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 68.1 bits (159), Expect = 4e-12
Identities = 30/59 (50%), Positives = 44/59 (74%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F+D LK ELL GI+ GF+KPS IQ+ +I A GRD++A+A++GTGKTA + + +L+
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLE 107
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQL---EVGVHVVV 530
H+ A+ GGT++++DI +L ++ VHVVV
Sbjct: 141 HMGAQVMVTTGGTSLKDDILRLYNKDIFVHVVV 173
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 68.1 bits (159), Expect = 4e-12
Identities = 30/59 (50%), Positives = 44/59 (74%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F+D LK ELL GI+ GF+KPS IQ+ +I A GRD++A+A++GTGKTA + + +L+
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLE 107
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQL---EVGVHVVV 530
H+ A+ GGT++++DI +L ++ VHVVV
Sbjct: 141 HMGAQVMVTTGGTSLKDDILRLYNKDIFVHVVV 173
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 60.5 bits (140), Expect = 8e-10
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F + L LLRG+ GFEKPS IQ +AI G D+IAQA+SGTGKT FS+ L+
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALE 73
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/59 (52%), Positives = 36/59 (61%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F D LK ELLR I GFE PS +Q I A G D+I QA+SG GKTA F ++ LQ
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQ 107
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/59 (52%), Positives = 36/59 (61%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F D LK ELLR I GFE PS +Q I A G D+I QA+SG GKTA F ++ LQ
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQ 107
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 57.2 bits (132), Expect = 8e-09
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Frame = +1
Query: 154 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MXASKGRDVIAQAQSGTGKTATFSIS 327
++F+++ L L RG+Y GF KPS IQ+ A+ + A ++IAQ+QSGTGKTA F ++
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLT 162
Query: 328 IL 333
+L
Sbjct: 163 ML 164
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 54.4 bits (125), Expect = 5e-08
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
VE F D + + L G+ GF P+ IQ++ I A GRDV+ A++G+GKT F I I
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 331 LQT 339
++T
Sbjct: 109 IET 111
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
F+D++L E LL + G++KP+ +Q+ AI RD++A AQ+G+GKTA F I IL
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPIL 934
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 444 LNAKCHACIGGTNVREDIRQLEVGVHVVV 530
++ KCHACIGGTNVRED +LE GVHVVV
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGVHVVV 29
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/61 (36%), Positives = 39/61 (63%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
+ +F++ NL E L + ++KP+ +Q+ +I GRDV+A AQ+G+GKTA F + +
Sbjct: 710 INSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLPV 769
Query: 331 L 333
+
Sbjct: 770 M 770
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + +E+F D+NL EL + F+ P+ IQ +++ GRD+I A++G+GKT
Sbjct: 66 DCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLA 125
Query: 316 FSISI 330
+S+ +
Sbjct: 126 YSLPL 130
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 50.4 bits (115), Expect = 9e-07
Identities = 20/61 (32%), Positives = 40/61 (65%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
+ +F+++ E+L+ I G+ +P+ +Q+ A+ GRD++A AQ+G+GKTA + + +
Sbjct: 478 ITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPV 537
Query: 331 L 333
L
Sbjct: 538 L 538
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +1
Query: 142 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFS 321
D+V+ +D ++ + E R + GF P+ IQ I A G+DV A A +GTGKTA F
Sbjct: 7 DEVLNAYDSLDEEAED-RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFM 65
Query: 322 ISILQTNRY 348
+ IL+ Y
Sbjct: 66 LPILERLLY 74
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 48.0 bits (109), Expect = 5e-06
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVV 527
+++ +CHACIGGTN+ EDIR+L+ G H+V
Sbjct: 29 YMSVQCHACIGGTNIGEDIRKLDYGQHIV 57
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
+F + L + L+ A G +KP+ IQ + +GRD I A++G+GKTA F++ ILQ
Sbjct: 8 SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQ 67
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/61 (31%), Positives = 38/61 (62%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
+ + + + + +L + G++ P+ IQ++AI + RD+I A++G+GKTA F+I +
Sbjct: 100 IRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPL 159
Query: 331 L 333
L
Sbjct: 160 L 160
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKT 309
+ +F++ NL E L + ++KP+ +Q+ +I GRDV+A AQ+G+GKT
Sbjct: 133 INSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +1
Query: 172 NLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
++ E+ L+GI GF + IQ ++I KGRD++ A++G+GKT F + +++
Sbjct: 578 DVSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVE 632
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASK-GRDVIAQAQSGTGKTATFSISILQ 336
++ + + ++LR + GF KP+ IQ +I A RD+I A++G+GKT F I I+Q
Sbjct: 132 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQ 191
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATF 318
+F E+++ I + +P+ IQ +A+ A GRD+I A++G+GKTA F
Sbjct: 518 SFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAF 571
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 40.7 bits (91), Expect = 7e-04
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +1
Query: 40 SEDWPEDSKNG--PSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYG 213
+E+ PE SK +KD+ +D G++P + D F + ++ + + G
Sbjct: 40 AEEQPEVSKKKRKTAKDESEFD--EGVEPSVAQREGD-----FSKFRISQKTIDNLEDRG 92
Query: 214 FEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
IQ G DVI QA++GTGKT +F++ +++
Sbjct: 93 ITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVE 133
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +1
Query: 109 GMDPG-TLDTD--WDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVI 279
G +P T D+D + Q V +F + L++++L+ + A +P+ IQ I VI
Sbjct: 360 GQNPAFTPDSDMAFRQRVYSFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVI 419
Query: 280 AQAQSGTGKTATF 318
AQ+G+GKT +
Sbjct: 420 CAAQTGSGKTLAY 432
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 34.3 bits (75), Expect = 0.063
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGK 306
F + E L + + +G+ P+ IQ + + GRDV+ A +G+GK
Sbjct: 198 FFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGK 246
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 33.9 bits (74), Expect = 0.083
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F + + +L+ + G KP IQ++A+ + ++ ++++GTGK+ F + +Q
Sbjct: 162 FSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSVQ 220
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 32.7 bits (71), Expect = 0.19
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +1
Query: 31 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGI 201
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGW 78
Query: 202 YAYGFEKPSA 231
GF + A
Sbjct: 79 LLDGFPRTVA 88
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 265 GRDVIAQAQSGTGKTATFSISILQ 336
G+DV+A A++G+GKTA F I + +
Sbjct: 318 GKDVVAMARTGSGKTAAFLIPMFE 341
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTA 312
V+T+ ++ ++L + +EKP+ IQ +AI GRD+IA + T + A
Sbjct: 104 VKTWAQTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELA 157
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 181 EELLRGIYAYGFEKPSAIQQRAIMXASKGR-DVIAQAQSGTGKTATFSI 324
++ LR ++ + E S +QQRA SKGR DV +G+GK+ + +
Sbjct: 6 KKTLRNVFKFR-EFKSELQQRACETVSKGRQDVFVSMPTGSGKSLCYQL 53
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 268 RDVIAQAQSGTGKTATFSISILQ 336
+DVI A++G+GKT F++ ILQ
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQ 24
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 70 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 198
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 132 HRLGSSCRNLR*HEPQRRIVERH-IRLWF*KTFCNPATRNNXCIQGTRCYRSSPVRNWKN 308
HRL +C + + VER I+LW F N A + Q +C R NWK
Sbjct: 294 HRLALACGDANDTVDYIKQVERILIQLW--SFFDNSAKKT--AAQEDKCQRERQETNWKA 349
Query: 309 CYFLYIDSTNKSIQ 350
C ++ ST K+I+
Sbjct: 350 CRTRWL-STEKAIE 362
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 13 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 105
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 55 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 186
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 55 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 186
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 207 GVYASQQFFFEVHVIEGFDNLIPVGVKC 124
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
>SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Frame = +1
Query: 67 NGPSKDQGSYDGPPGMDPGTLD-------TDWDQVVE 156
NGP+ D YD PP P T D T+WD ++
Sbjct: 340 NGPTSDNTDYDSPPRATP-TYDAPTRSTRTNWDPTID 375
>SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 294 RNWKNCYFLYIDSTNKSIQXFVNVKL*SWLPQEXLGPTNSEGGDSPLXIH 443
R+WK YF+Y SI+ K +W QE G G + IH
Sbjct: 128 RDWKKRYFVYKHFLASSIKCLEYYKDRNWRRQEPKGVLTLYPGYEVMKIH 177
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,924,383
Number of Sequences: 59808
Number of extensions: 360230
Number of successful extensions: 965
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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