Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0088
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       57   1e-10
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.37 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.84 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 56.8 bits (131), Expect = 1e-10
 Identities = 25/65 (38%), Positives = 43/65 (66%)
 Frame = +1

Query: 145 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+     GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252

Query: 325 SILQT 339
            I+ T
Sbjct: 253 PIINT 257



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 471 GGTNVREDIRQLEVGVHVVV 530
           GGT+V     +L  G H++V
Sbjct: 309 GGTSVMHQRGKLSAGCHILV 328


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 384 PQEXLGPTNSEGGDSPLXIHLNAKCHACIGGT 479
           P+   G  +S  GDSP+  H +   H   GG+
Sbjct: 60  PRSLEGSYDSSSGDSPVSSHSSNGIHTGFGGS 91


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 428 PLGDSLEC*MPCLHWWHQCP 487
           P  +S++     LH WH CP
Sbjct: 458 PTEESVDALCNTLHHWHHCP 477


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 486 GHWCHQCKHGI*HSS 442
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
 Frame = +3

Query: 174 PQRRIVERHIRLWF*KTFC----NPATRNNXCIQGTRCYRSSPVRNWKNCYFLYIDSTNK 341
           P +++    I  WF  TFC    N AT  N        ++         C F+ +++   
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHK---------C-FMRVENVKG 570

Query: 342 SIQXFVNVKL*SWLPQEXLGPTNSEGGDSPLXIH--------LNAKCHACIGGTNV 485
           ++     V+     PQ     T      SP   H        LNA   A +G +N+
Sbjct: 571 AVWTVDEVEFYKRRPQRACSTTGGVPSKSPTLTHSPTMYGDALNANLQAALGDSNM 626


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,719
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)