Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0088
(530 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 101 2e-22
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 100 1e-21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 98 3e-21
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 95 3e-20
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 87 7e-18
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 72 2e-13
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 72 2e-13
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 69 1e-12
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 69 1e-12
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 69 2e-12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 64 7e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 62 3e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 62 3e-10
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 58 5e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 55 3e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 54 5e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 51 4e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 50 7e-07
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 50 1e-06
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 48 4e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 48 4e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 48 4e-06
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 48 5e-06
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 48 5e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 5e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 47 9e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 47 9e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 47 9e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 3e-05
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 45 3e-05
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 45 3e-05
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 45 3e-05
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 45 3e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 45 3e-05
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 45 4e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 44 5e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 5e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 44 6e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 44 6e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 44 6e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 1e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 43 1e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 42 2e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 3e-04
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 40 8e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 40 0.001
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 40 0.001
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 40 0.001
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 40 0.001
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 40 0.001
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 38 0.004
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 38 0.004
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 38 0.004
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 38 0.006
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 37 0.007
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 36 0.017
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 33 0.16
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 31 0.48
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 31 0.48
At1g72390.1 68414.m08373 expressed protein 30 0.85
At3g10020.1 68416.m01202 expressed protein 29 2.6
At1g76010.1 68414.m08825 expressed protein 28 4.5
At1g29180.1 68414.m03570 DC1 domain-containing protein contains ... 27 6.0
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa... 27 7.9
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 101 bits (243), Expect = 2e-22
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = +1
Query: 133 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTA 312
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+ KG DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 313 TFSISILQTNRYXIS*MSSFDPGSHKXXWAQQIQKVVIA 429
TF +LQ Y + + + AQQI+KV+ A
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTREL-AQQIEKVMRA 129
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 453 KCHACIGGTNVREDIRQLEVGVHVVV 530
K HAC+GGT+VRED R L+ GVHVVV
Sbjct: 137 KVHACVGGTSVREDQRILQAGVHVVV 162
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 99.5 bits (237), Expect = 1e-21
Identities = 55/99 (55%), Positives = 66/99 (66%)
Frame = +1
Query: 133 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTA 312
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+ KG DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 313 TFSISILQTNRYXIS*MSSFDPGSHKXXWAQQIQKVVIA 429
TF +LQ + + + + AQQI+KV+ A
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTREL-AQQIEKVMRA 129
Score = 47.2 bits (107), Expect = 7e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVVV 530
+L K HAC+GGT+VRED R L+ GVHVVV
Sbjct: 133 YLGVKVHACVGGTSVREDQRILQAGVHVVV 162
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 98.3 bits (234), Expect = 3e-21
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +1
Query: 124 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTG 303
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+ KG DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 304 KTATFSISILQ 336
KTATF +LQ
Sbjct: 91 KTATFCSGVLQ 101
Score = 44.0 bits (99), Expect = 6e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVVV 530
+L K AC+GGT+VRED R L+ GVHVVV
Sbjct: 135 YLGVKAQACVGGTSVREDQRVLQSGVHVVV 164
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 335 KQIDTXFRECQALILAPTR 391
+Q+D +CQAL+LAPTR
Sbjct: 101 QQLDISLVQCQALVLAPTR 119
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 95.1 bits (226), Expect = 3e-20
Identities = 42/68 (61%), Positives = 56/68 (82%)
Frame = +1
Query: 133 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTA 312
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+M +GRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 313 TFSISILQ 336
++S+ Q
Sbjct: 88 MIALSVCQ 95
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 405 TNSEGGDSPLXIHLNAKCHACIGGTNVREDIRQLEVGVHVV 527
T +E + +H N + HACIGG +V EDIR+LE GVHVV
Sbjct: 117 TQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVV 157
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 341 IDTXFRECQALILAPTR 391
+DT RE QALIL+PTR
Sbjct: 97 VDTSSREVQALILSPTR 113
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 87.0 bits (206), Expect = 7e-18
Identities = 37/62 (59%), Positives = 52/62 (83%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
+++FDDM + +++LRG+Y YG++KPS IQQRA++ KGRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 331 LQ 336
Q
Sbjct: 81 CQ 82
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVV 527
H N + HACIGG ++ EDI++LE GVH V
Sbjct: 116 HTNIQAHACIGGKSIGEDIKKLERGVHAV 144
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F+D LK ELL GIY GFE+PS IQ+ +I A GRD++A+A++GTGKTA F I +L+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F+D LK ELL GIY GFE+PS IQ+ +I A GRD++A+A++GTGKTA F I +L+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 69.3 bits (162), Expect = 1e-12
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F+D LK +LL+GIY GFEKPS IQ+ +I A G D++A+A++GTGKT F I +L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVVV 530
+LN + GGT++R+DI +L VH++V
Sbjct: 218 YLNIQVMVTTGGTSLRDDIMRLHQPVHLLV 247
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 69.3 bits (162), Expect = 1e-12
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F+D LK +LL+GIY GFEKPS IQ+ +I A G D++A+A++GTGKT F I +L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 441 HLNAKCHACIGGTNVREDIRQLEVGVHVVV 530
+LN + GGT++R+DI +L VH++V
Sbjct: 218 YLNIQVMVTTGGTSLRDDIMRLHQPVHLLV 247
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F+D LK +LLRGIY GFEKPS IQ+ +I A G D++A+A++GTGKT F I L+
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE 214
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 63.7 bits (148), Expect = 7e-11
Identities = 29/65 (44%), Positives = 46/65 (70%)
Frame = +1
Query: 142 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFS 321
++VV+TF ++ ++EEL++ G++ PS IQ A+ A +G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 322 ISILQ 336
I ILQ
Sbjct: 65 IPILQ 69
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 61.7 bits (143), Expect = 3e-10
Identities = 33/59 (55%), Positives = 36/59 (61%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F D LK ELLR I GFE PS +Q I A G DVI QA+SG GKTA F +S LQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ 106
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 61.7 bits (143), Expect = 3e-10
Identities = 33/59 (55%), Positives = 36/59 (61%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F D LK ELLR I GFE PS +Q I A G DVI QA+SG GKTA F +S LQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ 106
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 57.6 bits (133), Expect = 5e-09
Identities = 24/65 (36%), Positives = 44/65 (67%)
Frame = +1
Query: 142 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFS 321
++ ++F+++ L L+R + G EKP+ IQQ AI +G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 322 ISILQ 336
+ +LQ
Sbjct: 102 LPLLQ 106
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 54.8 bits (126), Expect = 3e-08
Identities = 26/61 (42%), Positives = 38/61 (62%)
Frame = +1
Query: 154 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
+TF ++NL LLR G++KP+ IQ I A GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 334 Q 336
+
Sbjct: 227 E 227
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 54.4 bits (125), Expect = 5e-08
Identities = 25/66 (37%), Positives = 41/66 (62%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + V+TF+D +++ I +EKP+AIQ +A+ GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 316 FSISIL 333
F + ++
Sbjct: 282 FVLPMI 287
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 51.2 bits (117), Expect = 4e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
+ ++++ L ELL+ + G++KPS IQ AI + RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 331 L 333
L
Sbjct: 372 L 372
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 50.4 bits (115), Expect = 7e-07
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 127 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSG 297
++T D V V TF +++L E L I + KP+ +Q+ AI + GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 298 TGKTATFSISIL 333
+GKTA F I+
Sbjct: 194 SGKTAAFCFPII 205
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 49.6 bits (113), Expect = 1e-06
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 127 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSG 297
++T D V V TF +++L E L I + KP+ +Q+ AI +GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 298 TGKTATFSISIL 333
+GKTA F I+
Sbjct: 207 SGKTAAFCFPII 218
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 48.0 bits (109), Expect = 4e-06
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAI--MXASKGRDVIAQAQSGTGKTATFSISI 330
F+D+NL EL++G+Y FEKPS IQ ++ + + +IAQA +G+GKT F + +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGM 152
Query: 331 L 333
L
Sbjct: 153 L 153
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +1
Query: 166 DMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
D+ + E+++ + G EK IQ+ + A +GRD+I +A++GTGKT F I I+
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 48.0 bits (109), Expect = 4e-06
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 91 SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXAS-KG 267
S DG ++ + + + M L L++ IY F++P+ IQ+ A+ +G
Sbjct: 169 SCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG 228
Query: 268 RDVIAQAQSGTGKTATFSISILQ 336
+DVI A++G+GKT F + ILQ
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQ 251
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + ++ F D N + +L I GF +P+ IQ + A KGRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 316 FSISIL 333
+ + L
Sbjct: 219 YLLPAL 224
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + ++ F D N + +L I GF +P+ IQ + A KGRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 316 FSISIL 333
+ + L
Sbjct: 219 YLLPAL 224
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
V TF L +LL + G++ P+ IQ +AI A G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 331 L 333
+
Sbjct: 169 I 169
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 46.8 bits (106), Expect = 9e-06
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +1
Query: 166 DMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
++ + E+++ + + G EK IQ+ + A +GRD+I +A++GTGKT F I I+
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 46.8 bits (106), Expect = 9e-06
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
F+ +NL + I G++ P+ IQ++ + G DV+A A++G+GKTA F I +L+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLE 88
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 46.8 bits (106), Expect = 9e-06
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +1
Query: 154 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
++F+++ L + LL + GF P+ +Q A+ KG D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 334 QTNRYXIS*MSSFDPGSH-KXXWAQQIQKVVIAP 432
I ++ SH + +IQ +++AP
Sbjct: 170 S----EIGPLAEKSRSSHSENDKRTEIQAMIVAP 199
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.2 bits (102), Expect = 3e-05
Identities = 30/104 (28%), Positives = 48/104 (46%)
Frame = +1
Query: 25 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 204
SS+ E+ K S D P G T D+ + FD L L+ I
Sbjct: 341 SSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIK 398
Query: 205 AYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
GFE + +Q+ + +G+DV+A+A++GTGKT F + ++
Sbjct: 399 DAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIE 442
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
+F+ ELLR + + GF P+ IQ ++ A +GRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
+F+ ELLR + + GF P+ IQ ++ A +GRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
+F+ ELLR + + GF P+ IQ ++ A +GRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + V++F D+ + +L + GF +P+ IQ + A KGRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 316 FSI-SILQTN 342
+ + +I+ N
Sbjct: 153 YLLPAIVHVN 162
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
F+ + L E + G KP+ +Q + GRDV+ AQ+G+GKTA F++ IL
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPIL 117
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
TF+ L E+LR + + GF P+ IQ + A + RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLI 491
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +1
Query: 154 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
+TF+ ++L + + I GF + + IQ +AI G DV+ A++G+GKT F I +
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 334 Q 336
+
Sbjct: 214 E 214
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
FD L L+GI GF+ + +Q+ + +G+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIE 140
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
V TF D++L + L I + +P+ +Q+ AI RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 331 L 333
+
Sbjct: 210 I 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
V TF D++L + L I + +P+ +Q+ AI RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 331 L 333
+
Sbjct: 210 I 210
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 157 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
TFD ++L E+ I GF+ + IQ +I +G+DV+ A++G+GKT F I ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
FD L L+ I G+E + +Q+ + KG+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIE 114
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +1
Query: 154 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
+TF ++ E++++ + F++P+ IQ A G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 334 QTNR 345
Q R
Sbjct: 434 QRLR 437
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +1
Query: 169 MNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
++L + L + G IQ+ ++ A +GRD+IA+A++GTGKT F I I++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 41.5 bits (93), Expect = 3e-04
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +1
Query: 25 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGT-LDTDWDQVVETFDDMNLKEELLRGI 201
S + + +D PE +G + + G ++ ++TF + NL E +L
Sbjct: 72 SEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCC 131
Query: 202 YAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
FEKPS IQ GRD+I A++G+GKT F I
Sbjct: 132 KT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGI 170
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + ++ + L ++L + +EKP IQ +A+ GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 316 FSISILQ 336
F + +L+
Sbjct: 450 FVLPMLR 456
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/95 (30%), Positives = 49/95 (51%)
Frame = +1
Query: 52 PEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSA 231
P+DSK G S+D + GT+ + + V F + + ++ RG+ + +
Sbjct: 47 PKDSKIGKSEDGKN---------GTVFSRYAGV-RKFAQLPISDKTKRGLKDAKYVDMTD 96
Query: 232 IQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQ 336
+Q AI A GRD++ A++G+GKT F I IL+
Sbjct: 97 VQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +1
Query: 181 EELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLI 134
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 193 RGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSI 324
R +Y+ GF PS IQ ++ A + RD++A A++G+GKT + I
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLI 285
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 211 GFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATF 318
GFE P+ +Q +AI GRDV+ A +GTGKT +
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAY 84
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
++ F DM LLR + G P+ IQ + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 331 L 333
+
Sbjct: 156 I 156
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 465 CIGGTNVREDIRQLEVGVHVVV 530
CIGG ++R + ++ GVH+VV
Sbjct: 213 CIGGVDMRSQLDVVKKGVHIVV 234
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +1
Query: 187 LLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
+LR + GF++P+ IQ++AI GR+ A A +G+GKT F +L
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +1
Query: 136 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTAT 315
D + ++ + L ++L + +EKP IQ +A+ GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 316 FSISILQ 336
F + +L+
Sbjct: 583 FVLPMLR 589
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQT 339
FD+ + L+ + A G K + +Q + G+D + +A++GTGK+ F + ++T
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 37.9 bits (84), Expect = 0.004
Identities = 31/116 (26%), Positives = 52/116 (44%)
Frame = +1
Query: 175 LKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQTNRYXI 354
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ R
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRR-- 80
Query: 355 S*MSSFDPGSHKXXWAQQIQKVVIAPWXFT*MLNAMLALVAPMSVKIFXNWKLVFM 522
+S+ P H Q+ V+I+P T L+A + VA V N V +
Sbjct: 81 --SNSYPPKPH------QVMGVIISP---TRELSAQIHKVAEPFVSTLPNVNSVLL 125
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 37.9 bits (84), Expect = 0.004
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +1
Query: 112 MDPGTLDTDWDQVVETFDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQ 285
MD +T ++ F ++ L E+++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 286 AQSGTGKTATFSISILQTNRYXIS*MSSFDPGSHKXXWAQQIQKVVIAP 432
A +G+GKT F + ++ R +S+ P H Q+ V+I+P
Sbjct: 61 AATGSGKTLAFLLPFIEIIRR----SNSYPPKPH------QVMGVIISP 99
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 160 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISILQT 339
FD+ + L+ + A G K + +Q + G+D + +A++GTGK+ F + ++T
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 37.1 bits (82), Expect = 0.007
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 151 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISI 330
++ F DM +L + G +P+ IQ + + GRD+I A +G+GKT F + +
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 331 L 333
+
Sbjct: 205 I 205
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 465 CIGGTNVREDIRQLEVGVHVVV 530
CIGG ++R + ++ GVH+VV
Sbjct: 262 CIGGIDMRSQLEVVKRGVHIVV 283
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 130 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKT 309
DT + ++ + L + + + GF++PS Q I G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 310 ATFSISIL 333
+ I+
Sbjct: 132 HGYLAPII 139
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 271 DVIAQAQSGTGKTATFSISILQ 336
DVI QA+SG GKTA F +S LQ
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQ 23
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 31.1 bits (67), Expect = 0.48
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +1
Query: 160 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 334 QTNRYXIS*MSSFDPGSHKXXWAQQIQKVVIAP 432
+ R +SF P H Q+ V+I+P
Sbjct: 76 EILRR----STSFPPKPH------QVMGVIISP 98
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 31.1 bits (67), Expect = 0.48
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 241 RAIMXASKGRDVIAQAQSGTGKTATFSISIL 333
+AI A G+ ++A A +G+GKTA+F + I+
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 297 NWKNCYFLYIDSTNKSIQXFVNVKL*SWLPQEXLGPTNSEGG 422
NWKN + D +SIQ + N + + P + G N EGG
Sbjct: 173 NWKNTLLQHQDMLGRSIQ-YPNTSIQRFSPHQMEGVMNQEGG 213
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 70 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 243
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 244 AIMXASKGR 270
+ GR
Sbjct: 141 EVDPRLVGR 149
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 25 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 123
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At1g29180.1 68414.m03570 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 444
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = +2
Query: 182 KNC*EAYTPMVLKNLLQSSNAQ*XLHPRDAMLSLKPSQELEKLLLSLYRFYKQIDTXFRE 361
K C TP+ NL LH A LS K + +LSL Y ++ +
Sbjct: 177 KQCDACITPIYFGNLYSCIQCSFILHEECANLSRKIHHPIHPPMLSLVGGYNEVRKYEDK 236
Query: 362 CQA 370
C A
Sbjct: 237 CSA 239
>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 483 HWCHQCKHGI*HSSESPR 430
HWCH C+ GI E R
Sbjct: 10 HWCHTCRRGIHLQGEGRR 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,595
Number of Sequences: 28952
Number of extensions: 247765
Number of successful extensions: 784
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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