Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0087
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    28   1.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   1.8  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   3.2  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   5.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   7.4  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   9.8  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   9.8  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.8  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   9.8  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +3

Query: 99  NTRSPTNSCQDSP--KTCA-PGRVVAAPILGTA*NTRYS--PTSNTCPRRQVPELPSPHR 263
           N+ +P +S   S    T A P    AA + G++ +  YS  PT++T  +        PHR
Sbjct: 85  NSAAPASSSPTSATLSTAAHPVHTNAAQVAGSSSSYVYSVPPTNSTTSQASAKHSAVPHR 144

Query: 264 PSAFHRCQLNTSERD 308
            S F    L  S  D
Sbjct: 145 SSQFQSTTLTPSTTD 159


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 359 NKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYGSWGPVFKDKK 499
           N A      F  +AP  + A  TYQ++K+ E   +  ++GP++ + K
Sbjct: 409 NDATKRKLDFMSSAPGWEDAYQTYQLLKEYESAFEAPAYGPIYMNLK 455


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 150 PGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPS---PHRPSAFHRCQLNTSERDKI 314
           P + +  P+ G+  +    PT N  P  Q P LP+     RPS   R    TS  D +
Sbjct: 16  PEQPMRKPLSGSYSHNSAGPTPNMSPFEQKPPLPTHMDVRRPSGPFRIVKATSTEDAL 73


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 219 CWMWVSTACSRRFPV 175
           C++WVS AC R+F V
Sbjct: 710 CFLWVSGACVRQFGV 724


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 204 SPTSNTCPRRQVPELPSPHRPSAFHRCQL 290
           SP S T  + Q+   P P RPS F R  L
Sbjct: 83  SPPSFTHSQPQIQAQPVPRRPSLFDRPNL 111


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 YQVVKQQEQKKDYGSWGPVFKDKKTFTTCTY 520
           Y+++K ++Q  DY   GPV  +    T C Y
Sbjct: 318 YELIKIEDQNTDYSCIGPV--NAAMNTVCVY 346


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = -1

Query: 174 LARRLP-----FLVHRFLASLGKNLSVIAYFLFDFVI 79
           + RR+P     F+   F++S+G  +S+++ FLF +V+
Sbjct: 442 MPRRIPDYPEAFVGWNFVSSIGSVISILSLFLFMYVM 478


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 537 SRCSSSLLYHYQFVDVTIL*FLYS 608
           SRCS  +L+H  F   ++L  +Y+
Sbjct: 416 SRCSDHVLFHAGFASASLLRLIYA 439


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 379 ASVIGLVGGLAFISTSHGC 323
           A VIG +G   +++ +HGC
Sbjct: 327 APVIGKIGSSIYVAAAHGC 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,114
Number of Sequences: 5004
Number of extensions: 58506
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)