Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0087
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0265 - 21788531-21789798,21789914-21789947 32 0.36
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369... 32 0.47
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 30 1.4
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 29 2.5
11_01_0752 - 6327269-6327764,6328571-6328839 29 4.4
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 29 4.4
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 29 4.4
06_03_0142 + 17208577-17209485,17209578-17210195 28 5.8
06_03_0080 - 16320459-16320839,16321405-16321524,16321929-163220... 28 5.8
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 28 7.7
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374... 28 7.7
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 28 7.7
02_01_0241 + 1595188-1595498,1596621-1596654,1596791-1596979,159... 28 7.7
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -3
Query: 208 GEYRVF*AVPSIGAATTLPGAQVFGESWQEFVGDRVFSLRF 86
G+ + + V S+G L + F ESW +FVG RVF L F
Sbjct: 298 GDRQTYNLVQSLGKLLLL--VRYFRESWDQFVGVRVFELSF 336
>01_01_0505 -
3695937-3695972,3696251-3696316,3696658-3696747,
3696934-3697143,3697371-3697404,3697566-3697912
Length = 260
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -2
Query: 362 CWRSCIH-LHEPWLLAFNFISF 300
CW+ C+ +H WLLAF +SF
Sbjct: 71 CWKPCLEQIHPGWLLAFRVVSF 92
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 229 DARSLNSPHPIVHPPSTGVSLTRV 300
D+RS +SPHP+ PP + S +RV
Sbjct: 219 DSRSSSSPHPLPRPPGSPCSSSRV 242
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 427 SW*SWLLHRSGHIKRLASVIGLVGGLAFISTSHG 326
SW W L + ++RLA+ +G VGG+A + S G
Sbjct: 130 SW-LWWLETAADLRRLATAVGDVGGVAAVVGSGG 162
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 102 TRSPTNSCQDSPKTCAPGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPSPHRPSAFH 278
T PT + + + C P + + A + +SP S +CP + P+ PSA H
Sbjct: 46 TSKPTEG-ESTTRRCRPTQSPSTSGAPAASSPSFSPASPSCPAKLRSPPPTSGEPSAVH 103
>04_04_1312 + 32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 28.7 bits (61), Expect = 4.4
Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 2/167 (1%)
Frame = +3
Query: 93 RENTRSPTNSCQDSPKTCAPGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPSPHRPSA 272
REN+++ ++ +PK G P+ N P S P+ + P +
Sbjct: 738 RENSQAGASAVYSTPKLDGSGNSGVDPLQKNTDNQNKRPASGEAPKADMKRTAKPDK--- 794
Query: 273 FHRCQLNTSERDKIEC*QPWLVEMNARPPTRPITLASLLMWPLL*RSQLHQLTRWSSSRN 452
C+ E+ + E P + P +P L S + P SS++
Sbjct: 795 -LYCRRQPKEKAEEE---PVSSAVQEEPKEKPEELVSSAVQP-------------SSTQR 837
Query: 453 RRKTTVPGGQFSRTRRLSLHAL--MLNMTSSRCSSSLLYHYQFVDVT 587
R+T P G + TR+L + +++ + C ++ ++ + +T
Sbjct: 838 PRRTADPFGHYKPTRQLLKGEILELVHQLAIGCKEQVILEFEEISMT 884
>04_04_1311 - 32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 28.7 bits (61), Expect = 4.4
Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 2/167 (1%)
Frame = +3
Query: 93 RENTRSPTNSCQDSPKTCAPGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPSPHRPSA 272
REN+++ ++ +PK G P+ N P S P+ + P +
Sbjct: 712 RENSQAGASAVYSTPKLDGSGNSGVDPLQKNTDNQNKRPASGEAPKADMKRTAKPDK--- 768
Query: 273 FHRCQLNTSERDKIEC*QPWLVEMNARPPTRPITLASLLMWPLL*RSQLHQLTRWSSSRN 452
C+ E+ + E P + P +P L S + P SS++
Sbjct: 769 -LYCRRQPKEKAEEE---PVSSAVQEEPKEKPEELVSSAVQP-------------SSTQR 811
Query: 453 RRKTTVPGGQFSRTRRLSLHAL--MLNMTSSRCSSSLLYHYQFVDVT 587
R+T P G + TR+L + +++ + C ++ ++ + +T
Sbjct: 812 PRRTADPFGHYKPTRQLLKGEILELVHQLAIGCKEQVILEFEEISMT 858
>06_03_0142 + 17208577-17209485,17209578-17210195
Length = 508
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -3
Query: 184 VPSIGAATTLPGAQVFGESWQEFVGDRVFS 95
+P + ATTL A+VF ES EF+ DRV S
Sbjct: 231 LPRVMCATTLHRAEVFVESVMEFM-DRVIS 259
>06_03_0080 -
16320459-16320839,16321405-16321524,16321929-16322072,
16322493-16322544,16323009-16323100,16323912-16324014,
16324237-16324300,16324559-16324973
Length = 456
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 345 NARPPTRPITLASLLMWPLL 404
N++PP P+ L ++ +WPL+
Sbjct: 181 NSKPPDAPVLLVNIPLWPLI 200
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 231 RQVPELPSPHRPSAFHRCQLNTSE 302
R ELP H+ + HRC LNT +
Sbjct: 918 RPTGELPDYHQEAPVHRCGLNTEQ 941
>03_06_0084 +
31536286-31536718,31536907-31536983,31537380-31537428,
31537778-31538048,31540876-31541104,31541511-31541750
Length = 432
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 120 SCQDSPKTCA-PGRVVAAPILGTA*NTRYSPTSN-TCPRRQVPELPSPHRPSAFHRC 284
+C D C+ P AA A + TS T P VP P+P P+ FH C
Sbjct: 225 ACDDMVGICSSPAPPAAATSSAAAYFLCATTTSTATAPLAVVPSPPAPTIPTRFHEC 281
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +3
Query: 429 TRWSSSRNRRKTTVPGGQFSRTRRLSLHALMLNMTSSRCSSSLLYHYQFVDVTIL*FLYS 608
TR SS R VPG F+R S A +L + +C S + Y D L F
Sbjct: 670 TRHVSSSQRNNQIVPGQHFARHAGSS--AGILEEIAMKCGSKVEYRSALCDTADLQFSIE 727
Query: 609 MSFVKSKI 632
+ V K+
Sbjct: 728 VWIVGEKV 735
>02_01_0241 +
1595188-1595498,1596621-1596654,1596791-1596979,
1597956-1598045,1598136-1598201,1598680-1598892
Length = 300
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -2
Query: 359 WRSCIH-LHEPWLLAFNFISF 300
WR C+ +H WLL + ISF
Sbjct: 60 WRPCLRDIHPAWLLGYRLISF 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,291,821
Number of Sequences: 37544
Number of extensions: 430103
Number of successful extensions: 1214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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