Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0087
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9)                30   1.5  
SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)                   30   1.5  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.4  
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)                 28   5.9  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    28   7.9  
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        28   7.9  
SB_11604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)              28   7.9  

>SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9)
          Length = 319

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 102 TRSPTNSCQDSPKTCAPGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPSPHRPSAFH 278
           T + TN+   SP    P + V  P   +  NT +      CP + V  LP+  R +  H
Sbjct: 108 TLARTNTAHISPYKHCPHQPVQTPPTSSRANTAHISQCKHCPHQPVQTLPTSARTNTAH 166


>SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)
          Length = 533

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -2

Query: 275 EGGWTMG*GEFRDLASRARVGCG*VPRVLGGSQYWRGDYPSWCT 144
           + GW +    F          CG V  +  G  YWRG  P  CT
Sbjct: 307 DSGWYLSDRPFESSCPPGVKECGPVKTIKEGMMYWRGIVPENCT 350


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 84   QNRRENTRSPTNSCQDSP-KTCAPGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPSPH 260
            + RR ++ SP+   +DSP  +  P R   +P        R SP+++  P R  P LP P 
Sbjct: 896  RRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMRSSP-LPPPQ 954

Query: 261  RPSA 272
            R  A
Sbjct: 955  RKRA 958


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 344 ECKTANKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYG 469
           +C T     Y+C++ D   P  +  +PTY+   Q+ Q ++ G
Sbjct: 136 QCNTRGHTAYSCRARDSRIPNPRNQNPTYRPFFQRPQWQNNG 177


>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 344 ECKTANKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYG 469
           +C T     Y+C++ D   P  +  +PTY+   Q+ Q ++ G
Sbjct: 437 QCNTRGHTAYSCRARDSRIPNPRNQNPTYRPSFQRPQWQNNG 478


>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +3

Query: 102 TRSPTNSCQDSPKTCAPGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPSPHRPSAFH 278
           T +  N+   SP    P + V  P   +  NT +      CP + V  LP+  R +  H
Sbjct: 445 TSASANTAHISPCKHCPHQPVQTPPTSSRANTAHISQCKHCPHQPVQTLPTSARTNTAH 503



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 102 TRSPTNSCQDSP-KTCAPGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPSPHRPSAFH 278
           T + TN+   SP K C    V   P    A     SP  + CP + V  LP+  R +  H
Sbjct: 570 TSARTNTAHISPYKHCPHHPVQTLPTSARANTAHISPCKH-CPHQPVQTLPTSARANTAH 628

Query: 279 RCQ 287
             Q
Sbjct: 629 ISQ 631


>SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)
          Length = 222

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 344 ECKTANKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYG 469
           +C T     Y+C++ D   P  +  +P Y+   Q+ Q ++ G
Sbjct: 172 QCNTRGHTAYSCRARDSRIPKPRNQNPNYRTSLQRPQWQNNG 213


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 46  FSKYNDKPQVXNDKIEEKIRDHRQILAKTR--QKPVH 150
           F K   KP +  D++ E++ DH  ++ +T   Q+P +
Sbjct: 628 FGKREPKPSIQLDRLIERLEDHEDLMQETSSVQRPAN 664


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 305 SFTRVKLTPVEGGWTMG*GEFRDLASRA 222
           S + +K     GGW MG G F+D+ S A
Sbjct: 86  SSSNMKTLLAVGGWNMGSGPFQDMVSTA 113


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 305 SFTRVKLTPVEGGWTMG*GEFRDLASRA 222
           S + +K     GGW MG G F+D+ S A
Sbjct: 10  SSSNMKTLLAVGGWNMGSGPFQDMVSTA 37


>SB_11604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 135 PKTCAPGRVVAAPILGTA*NTRYSPTSNTCPRRQVPELPSPHRP 266
           PKT   G  +     G   +TR  P+     R+  P  P PHRP
Sbjct: 177 PKTVPIGTTIQMGGGGGRKSTRPPPSRRRRRRKVTPSYPCPHRP 220


>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
          Length = 1099

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 235 RSLNSPHPIVHPPST--GVSLTRVKEIKLNASSHG 333
           R+L+ PHPI HP S      L   +  KLN +++G
Sbjct: 879 RALHEPHPIDHPESAAPATKLGEHRVSKLNQTANG 913


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,938,512
Number of Sequences: 59808
Number of extensions: 482493
Number of successful extensions: 1413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)