Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0087
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43760.1 68415.m05440 molybdopterin biosynthesis MoaE family ...    30   1.2  
At5g62960.1 68418.m07899 expressed protein                             29   2.8  
At1g47390.1 68414.m05246 F-box family protein contains F-box dom...    27   8.5  

>At2g43760.1 68415.m05440 molybdopterin biosynthesis MoaE family
           protein contains Pfam profile: PF02391 molybdopterin
           converting factor, subunit 2
          Length = 198

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -3

Query: 226 GHVLDVGEYRVF*AVPSIGAATTLPGAQVFGESWQEFVGDRVFSLRFCHXTPAVYRCIS 50
           GH +DV +Y  + + P  GA  T  G      +   F G  V  LR+    P   RC+S
Sbjct: 15  GHKVDVVKYIDYVSAPQAGAIATFSGT-----TRDMFEGKTVLELRYEAYVPMATRCLS 68


>At5g62960.1 68418.m07899 expressed protein
          Length = 347

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 359 WRSCI-HLHEPWLLAFNFISF 300
           WR C+ ++H  WLLAF  ++F
Sbjct: 91  WRPCLRNIHPAWLLAFRVVAF 111


>At1g47390.1 68414.m05246 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 118 FVGDRVFSLRFCHXTPAVYRCISKTRLRDVSAGE 17
           F  DR+  L+ CH T  +   ++K ++R+ S+G+
Sbjct: 246 FREDRLSLLKQCHLTKKIEIWVTKNKIRNCSSGD 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,210
Number of Sequences: 28952
Number of extensions: 321885
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)