Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0086
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      29   0.48 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.5  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   1.9  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   2.6  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    26   4.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.9  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 478 LVLVSHLYTVISRFCVLDQYLSYFFLSVIFN-RFVCQIYYANFSRFK 341
           LVL+   Y  ++   V    +++ FLS+IF   F+C I++    RFK
Sbjct: 261 LVLIISAYIALN--AVASVVIAFVFLSLIFFISFICPIWFIKLQRFK 305


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -1

Query: 433  VLDQYLSYFFLSVIFNRFVCQIYYANFSRFKLILIKSYVSDLYNGLEI 290
            +L QY++    S+      C++   + S    +L+++ V D+Y+ L+I
Sbjct: 2442 LLTQYVNANIPSISMETTACEVVGTSLSLLNKVLVENEVGDIYSYLKI 2489


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 478 LVLVSHLYTVISRFCVLDQYLSYFFLSVIF 389
           + L +HL T ISRF +LD  L +F +S  F
Sbjct: 180 VALDNHLAT-ISRFILLDSMLLFFIISTFF 208


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 574 SPWVLPANGSSRPTGGPVLTVWLTQHGT-LTANYGSLKKPF 693
           SP + P N  + PT  P  T WL    T + AN    ++PF
Sbjct: 352 SPSIQPPNLLNLPTASPESTSWLPGSQTNIPANTNRSERPF 392


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
 Frame = +3

Query: 213 NHKQRDHS------SFPFIESIKYSYRRK 281
           NHKQ DHS      + PFIE +   Y+++
Sbjct: 20  NHKQEDHSNSYQTRTIPFIEPLSREYQKR 48


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 427 DQYLSYFFLSVIFNRFVCQIYYANFSRFKLILIKSYVSDLYNGLEISEFFLL*E 266
           +++ ++ FLS +F  F   I Y     + +       S LYN L  S   LL E
Sbjct: 137 NRFYAHVFLSWLFFGFTIFIIYRELRYYVIFRHAMQSSGLYNNLPSSSTMLLTE 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,887
Number of Sequences: 5004
Number of extensions: 60345
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)