Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0086
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39674-4|AAA80414.2|  182|Caenorhabditis elegans Ubiquitin conju...    29   4.2  

>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 186 DTNLQQFGHNHKQR---DHS-SFPFIESIKYSYRRKNSEISKP 302
           DT +   GHNH++R   DH  + P ++   +++RRK +    P
Sbjct: 175 DTTIDHTGHNHRRRRSDDHDPNDPNVDHTGHNHRRKRNHDDDP 217



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 186 DTNLQQFGHNHKQR---DHS-SFPFIESIKYSYRRKNSEISKP 302
           DT +   GHNH++R   DH  + P ++   +++RR+  +   P
Sbjct: 264 DTTIDHTGHNHRRRRSEDHDPNDPNVDHTGHNHRRRRDQDDDP 306


>U39674-4|AAA80414.2|  182|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein22 protein.
          Length = 182

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 373 QIYYANFSRFKLILIKSYVSDLYNGLEISE 284
           Q++  N+SR  +    SY+ DL+  +E+ E
Sbjct: 82  QVHIENYSRLNVSEALSYIEDLFRSIEVDE 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,031,252
Number of Sequences: 27780
Number of extensions: 327928
Number of successful extensions: 850
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)