Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0086
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger) fa...    31   0.73 
At5g66390.1 68418.m08372 peroxidase 72 (PER72) (P72) (PRXR8) ide...    29   3.9  
At2g01790.1 68415.m00109 meprin and TRAF homology domain-contain...    28   6.8  
At1g20300.1 68414.m02534 pentatricopeptide (PPR) repeat-containi...    28   6.8  

>At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 226

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 184 STLTYNNLDTITNSAITPASPLLNPSNTLIGEKIQRFLNHY 306
           S L  N L+ I+N+A   ++PL  P NTL+  ++QR ++ +
Sbjct: 116 SVLFPNALNQISNNANVSSNPLGEPRNTLLDTRMQRQVDEH 156


>At5g66390.1 68418.m08372 peroxidase 72 (PER72) (P72) (PRXR8)
           identical to SP|Q9FJZ9 Peroxidase 72 precursor (EC
           1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) {Arabidopsis
           thaliana}
          Length = 336

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 182 YDANIYKTRDILKMMVKLALSHQPTQTGSFIVLHIY--FYKG 63
           YD +  K ++I++ +V  A  H P    S + LH +  F KG
Sbjct: 38  YDQSCPKAQEIVQSIVAKAFEHDPRMPASLLRLHFHDCFVKG 79


>At2g01790.1 68415.m00109 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 269

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 657 SAVLCKPDGEYRPARWTRGA 598
           S  LC PD EY P+ W R A
Sbjct: 54  SLYLCVPDSEYLPSGWRRRA 73


>At1g20300.1 68414.m02534 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 537

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 211 TITNSAITPASPLLNPSNTLIGEKIQRFL-NHY 306
           TIT +   P SPLL P +T   EK    + +HY
Sbjct: 44  TITAAVSVPISPLLTPEDTQTVEKFHSIIKDHY 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,019
Number of Sequences: 28952
Number of extensions: 298533
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)