Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0085
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    28   1.7  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   5.1  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   5.1  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   6.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   9.0  

>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 24  DIESILRTNTFFGAADWIAKAENFARTPIESYSYSLNAR 140
           DIE +++    F   D I K    AR  +E+Y+YSL  +
Sbjct: 542 DIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQ 580


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 514 TEDPPSVIMWHSTTPIN 564
           T DPP VI+WH+    N
Sbjct: 183 TNDPPHVIVWHTAKGTN 199


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 214 TIITFLDGQSSWMFPRCQNETRSLRRENCSGYDS 315
           T +T+LD QSS +F    N+T SL  ++ S  D+
Sbjct: 174 TGLTYLDDQSSVLFIATTNKTYSLSGKSLSCLDN 207


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 474 REPPCPTLIKKA*DRRSPFRYYVALHNADQXV 569
           R PP PT ++K     SP+R  + L + DQ V
Sbjct: 585 RTPPKPTTLQKQQQSPSPWRSELFLSDPDQNV 616


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 388 IYRVNR-RSMDSVESHKQKFILDCGSNHIPSSFLV 287
           +Y VN  +S DSVE+ +Q+F+     +     F++
Sbjct: 87  VYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFII 121


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 275  REVFDEKTARDMIRSTVEYKFLFVTFDTIHRPAVNPIDLALDLYQK 412
            R + D+K  RD + + +   +       IHRP + P+ +++ LY K
Sbjct: 881  RNLLDDKKCRDELITFLFVDYADSKIQDIHRPLLMPVVISI-LYGK 925


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,657
Number of Sequences: 5004
Number of extensions: 75826
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)