Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0085
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058...    43   3e-04
07_03_0777 + 21450236-21450286,21450432-21450830,21450968-214511...    29   4.1  
06_03_0382 - 20142830-20144329                                         29   4.1  
01_01_0378 - 2953514-2954341,2954388-2954504                           29   4.1  
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638...    29   5.4  
07_01_0737 + 5614552-5616196,5617425-5617600,5617811-5617930,561...    28   7.1  
02_01_0232 + 1543597-1543800,1544189-1544377,1544695-1544859,154...    28   7.1  
02_01_0088 - 627825-628984,629339-629509,629612-630416                 28   9.4  

>04_04_1393 -
           33204699-33204806,33204927-33205164,33205581-33205825,
           33206229-33206339,33206645-33206743,33207684-33207731,
           33207882-33207999,33208085-33208115,33208700-33208806,
           33209644-33209725,33210010-33210104,33210579-33210664,
           33211074-33211195,33211613-33211824,33212362-33212510,
           33212755-33212982
          Length = 692

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +3

Query: 6   FLDAMIDIESILRTNTFFGAADWIAKAENFARTPIESYSYSLNARNQITLWGPN 167
           F+D + D++++L ++  F    W+  A+  AR   +   Y  NAR QIT+W  N
Sbjct: 619 FIDLVNDLDTLLASHEGFLLGPWLESAKGLARDKEQEMQYEWNARTQITMWFDN 672


>07_03_0777 +
           21450236-21450286,21450432-21450830,21450968-21451132,
           21451527-21451790,21451963-21452172,21452300-21452539,
           21452640-21452777
          Length = 488

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 414 HFWYRSRARSIGLTAGRWIVSKVTNRNLYSTVDRIISR 301
           H+WYR    +  LTAG +    + NR+ Y T+ R+++R
Sbjct: 298 HWWYRVPNHAAELTAGYY---NLDNRDGYRTIARMLTR 332


>06_03_0382 - 20142830-20144329
          Length = 499

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 416 AFYPGLDDLPQNVIRPDPGKRTTLPDV 496
           +F P L  L + +++PDP +R T+P++
Sbjct: 234 SFSPDLARLVRRLLQPDPDRRITIPEI 260


>01_01_0378 - 2953514-2954341,2954388-2954504
          Length = 314

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 60  GAADWIAKAENFARTPIESYSYSLNARNQITLWGPNGEI 176
           GA  W+A++ +FART I   S   N  + +T    +G++
Sbjct: 145 GADPWLAESADFARTFISGLSAGANLAHHVTARVASGQL 183


>01_07_0342 -
           42860548-42862343,42863345-42863396,42863666-42863848,
           42864288-42864461,42864528-42864962
          Length = 879

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 300 AVFSSKTSRFVLASREHPRTLSI*ECNNSGIAQPIVCMHNLL 175
           A F++  + FVL+ R H   L + E   SG+A  ++   +LL
Sbjct: 493 ATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLL 534


>07_01_0737 +
           5614552-5616196,5617425-5617600,5617811-5617930,
           5618589-5618669,5618769-5618804,5618872-5618922,
           5618923-5618988,5620755-5620976,5622147-5622308,
           5622321-5622491
          Length = 909

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 300 AVFSSKTSRFVLASREHPRTLSI*ECNNSGIAQPIVCMHNLL 175
           A F++  + FVL+ R H   L + E   SG+A  ++   +LL
Sbjct: 182 ATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLL 223


>02_01_0232 +
           1543597-1543800,1544189-1544377,1544695-1544859,
           1545199-1545459,1546059-1546271,1546365-1546587,
           1547974-1548149
          Length = 476

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 414 HFWYRSRARSIGLTAGRWIVSKVTNRNLYSTVDRIISR 301
           ++WYR+ + +  LTAG +     TNR+ YS V R++ +
Sbjct: 278 YWWYRTASHAAELTAGFY---NPTNRDGYSPVFRMLKK 312


>02_01_0088 - 627825-628984,629339-629509,629612-630416
          Length = 711

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 69  DWIAKAENFARTPIESYSYSLNARNQITLWGPNGEITDYAC 191
           DW+A  E+ A+ P    SY+  + N   +  PN   T Y C
Sbjct: 213 DWVAGRESCAQAPKNRTSYACVSTNSSCINSPNA--TGYLC 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,902,055
Number of Sequences: 37544
Number of extensions: 499001
Number of successful extensions: 1192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)